Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 3.4e-109 398.7 251 100.0
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 6.0e-90 334.7 254 78.7
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 3.2e-67 259.2 263 62.7
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 1.1e-43 181.0 257 48.6
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 1.2e-21 107.8 251 31.1
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 7.7e-21 105.1 198 34.3
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 3.8e-20 102.8 253 28.5
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.5e-19 100.9 199 32.2
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.3e-19 99.8 255 31.0
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 7.3e-19 98.6 201 31.8
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 9.5e-19 98.2 145 40.0
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.8e-18 96.7 253 32.0
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.8e-18 96.7 253 32.0
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.8e-18 96.7 206 32.5
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.8e-18 96.7 207 29.5
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.6e-18 96.3 206 30.6
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 3.6e-18 96.3 203 32.5
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.7e-18 95.9 199 34.2
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 8.0e-18 95.1 199 33.2
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 1.0e-17 94.7 199 31.2
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.4e-17 94.4 205 32.2
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.8e-17 94.0 251 30.7
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 4.0e-17 92.8 249 26.1
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 4.0e-17 92.8 146 34.2
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 4.0e-17 92.8 87 44.8
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 5.2e-17 92.4 243 31.7
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 8.9e-17 91.7 199 30.7
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 8.9e-17 91.7 258 27.9
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.5e-16 90.9 206 31.1
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 1.5e-16 90.9 81 53.1
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 2.6e-16 90.1 81 48.1
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 2.6e-16 90.1 195 31.8
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 2.6e-16 90.1 80 46.2
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 3.4e-16 89.7 202 29.7
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 4.4e-16 89.4 200 30.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 1.3e-15 87.8 191 30.9
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.3e-15 87.8 206 27.7
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 2.2e-15 87.0 193 28.5
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 2.2e-15 87.0 79 49.4
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 4.9e-15 85.9 208 28.8
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 4.9e-15 85.9 199 27.6
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.1e-14 84.7 87 44.8
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.4e-14 84.3 204 29.4
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 1.4e-14 84.3 87 46.0
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 1.8e-14 84.0 80 46.2
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.4e-14 83.6 84 42.9
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 2.4e-14 83.6 193 26.9
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.2e-14 83.2 203 29.1
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 1.2e-13 81.3 84 45.2
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.6e-13 80.9 191 26.7
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 1.6e-13 80.9 81 43.2
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 2.7e-13 80.1 81 43.2
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 4.6e-13 79.3 193 30.6
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 4.6e-13 79.3 76 46.1
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 4.6e-13 79.3 195 28.7
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 7.8e-13 78.6 84 40.5
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 1.0e-12 78.2 89 46.1
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.3e-12 77.8 88 40.9
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.7e-12 77.4 80 42.5
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 3.0e-12 76.6 86 43.0
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 3.0e-12 76.6 88 42.0
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 3.9e-12 76.3 79 44.3
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 8.6e-12 75.1 109 33.9
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 1.1e-11 74.7 76 46.1
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.5e-11 74.3 71 40.8
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.9e-11 73.9 203 32.5
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 3.3e-11 73.2 73 43.8
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.3e-11 73.2 86 38.4
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.3e-11 73.2 83 42.2
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 3.3e-11 73.2 80 41.2
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 4.3e-11 72.8 83 43.4
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 4.3e-11 72.8 71 42.3
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 4.3e-11 72.8 71 42.3
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 5.6e-11 72.4 83 42.2
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 5.6e-11 72.4 71 43.7
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 5.6e-11 72.4 78 41.0
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 7.3e-11 72.0 78 39.7
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 9.5e-11 71.6 86 40.7
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 9.5e-11 71.6 83 38.6
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 9.5e-11 71.6 72 44.4
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 1.2e-10 71.2 85 35.3
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 1.6e-10 70.9 70 41.4
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.6e-10 70.9 71 39.4
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 2.1e-10 70.5 83 42.2
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 2.8e-10 70.1 71 39.4
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 3.6e-10 69.7 70 44.3
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 3.6e-10 69.7 70 42.9
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 3.6e-10 69.7 79 41.8
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.7e-10 69.3 71 46.5
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 4.7e-10 69.3 70 44.3
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 4.7e-10 69.3 85 43.5
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 6.2e-10 68.9 89 38.2
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 6.2e-10 68.9 86 40.7
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 6.2e-10 68.9 85 36.5
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 6.2e-10 68.9 71 42.3
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 8.0e-10 68.6 72 47.2
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.0e-09 68.2 71 42.3
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.0e-09 68.2 71 40.8
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 1.0e-09 68.2 71 40.8
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.4e-09 67.8 71 38.0
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.8e-09 67.4 86 34.9
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 1.8e-09 67.4 75 46.7
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 1.8e-09 67.4 71 40.8
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 2.3e-09 67.0 83 41.0
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.3e-09 67.0 71 39.4
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.1e-09 66.6 79 40.5
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.1e-09 66.6 79 40.5
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 3.1e-09 66.6 83 39.8
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 3.1e-09 66.6 85 41.2
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 4.0e-09 66.2 71 42.3
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 4.0e-09 66.2 71 42.3
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 4.0e-09 66.2 91 38.5
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.2e-09 65.9 71 42.3
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.2e-09 65.9 71 42.3
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 5.2e-09 65.9 91 39.6
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 5.2e-09 65.9 81 40.7
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 6.8e-09 65.5 71 42.3
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 8.9e-09 65.1 71 42.3
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 1.2e-08 64.7 76 43.4
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 1.2e-08 64.7 76 42.1
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 1.2e-08 64.7 82 37.8
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 2.0e-08 63.9 70 38.6
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 2.0e-08 63.9 125 32.0
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.0e-08 63.9 125 32.0
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 2.0e-08 63.9 81 39.5
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 2.0e-08 63.9 71 40.8
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 2.0e-08 63.9 71 40.8
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 2.6e-08 63.5 72 43.1
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 2.6e-08 63.5 81 40.7
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 3.4e-08 63.2 71 33.8
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 3.4e-08 63.2 83 39.8
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 3.4e-08 63.2 83 37.3
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 4.4e-08 62.8 81 38.3
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 5.8e-08 62.4 83 34.9
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 5.8e-08 62.4 71 39.4
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 5.8e-08 62.4 74 41.9
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 5.8e-08 62.4 81 40.7
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 7.5e-08 62.0 71 39.4
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 7.5e-08 62.0 71 39.4
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 7.5e-08 62.0 71 39.4
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 7.5e-08 62.0 78 41.0
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 9.8e-08 61.6 76 38.2
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 1.7e-07 60.8 83 39.8
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 1.7e-07 60.8 72 41.7
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 2.2e-07 60.5 89 36.0
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 2.2e-07 60.5 71 36.6
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 2.9e-07 60.1 82 36.6
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 2.9e-07 60.1 81 37.0
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 2.9e-07 60.1 71 39.4
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 3.7e-07 59.7 71 38.0
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.4e-07 58.9 114 32.5
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.4e-07 58.9 114 32.5
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.4e-07 58.9 114 32.5
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 6.4e-07 58.9 81 35.8
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.4e-06 57.8 71 38.0
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 1.9e-06 57.4 77 36.4
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.4e-06 57.0 80 33.8


User provided reference genes

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