Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 5.2e-136 487.6 237 100.0
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.3e-123 445.7 239 91.6
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 2.1e-113 412.5 231 87.4
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 1.5e-106 389.8 237 79.3
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 7.0e-80 301.2 212 63.7
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 8.0e-76 287.7 231 59.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.8e-75 286.6 214 63.1
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.8e-75 286.6 225 61.3
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 6.7e-75 284.6 209 61.7
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.1e-74 283.9 227 57.3
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.6e-74 282.7 234 58.1
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 4.4e-74 282.0 214 61.7
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 5.7e-74 281.6 240 59.2
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 7.4e-74 281.2 214 59.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.1e-72 275.8 239 56.1
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 3.1e-72 275.8 211 60.2
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.0e-72 274.6 209 61.7
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 9.1e-72 274.2 218 58.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 1.2e-71 273.9 218 57.8
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.6e-71 273.5 194 64.9
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.0e-71 273.1 224 58.9
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 7.7e-71 271.2 231 56.7
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.0e-70 270.8 221 57.0
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.7e-70 270.0 226 56.2
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.5e-70 268.1 217 59.0
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 8.5e-70 267.7 190 63.2
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 8.5e-70 267.7 208 61.1
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.5e-69 266.9 219 59.4
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.5e-69 266.9 226 57.1
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.5e-69 266.9 212 59.9
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 2.5e-69 266.2 219 59.4
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.2e-69 265.8 200 62.0
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 3.2e-69 265.8 225 58.2
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 4.2e-69 265.4 221 55.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 4.2e-69 265.4 212 59.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.2e-68 263.8 204 60.8
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.2e-68 263.8 244 54.9
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.6e-68 263.5 201 62.2
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.6e-68 262.3 216 58.8
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 6.1e-68 261.5 216 58.3
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 6.1e-68 261.5 216 58.3
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 8.0e-68 261.2 222 53.6
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.4e-67 260.4 201 60.2
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 3.0e-67 259.2 216 57.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 3.0e-67 259.2 217 57.1
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 5.2e-67 258.5 228 55.7
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 6.8e-67 258.1 197 59.9
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.8e-67 257.7 218 56.4
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-66 256.9 212 58.5
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.6e-66 256.1 221 55.2
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.4e-66 255.8 198 59.6
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 9.7e-66 254.2 233 55.8
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 9.7e-66 254.2 218 54.6
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 9.7e-66 254.2 205 60.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.3e-65 253.8 197 58.9
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.3e-65 253.8 208 57.7
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.3e-65 253.8 208 59.6
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 3.7e-65 252.3 184 62.0
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 6.3e-65 251.5 214 56.1
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.1e-64 249.2 225 54.2
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 4.1e-64 248.8 206 56.8
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 4.1e-64 248.8 222 55.0
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 5.3e-64 248.4 209 52.6
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 5.3e-64 248.4 204 57.4
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 5.3e-64 248.4 194 60.8
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 5.3e-64 248.4 215 54.0
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 7.0e-64 248.1 204 56.4
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.1e-64 247.7 204 56.9
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 9.1e-64 247.7 211 55.9
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-63 247.3 216 56.5
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.0e-63 246.5 217 53.5
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-63 246.5 216 55.6
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.7e-63 246.1 218 55.5
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.5e-63 245.7 195 57.4
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 5.9e-63 245.0 215 53.5
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-62 243.4 216 56.0
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-62 243.4 216 56.0
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.2e-62 243.0 252 49.2
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 2.2e-62 243.0 210 57.1
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 3.8e-62 242.3 208 53.8
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 3.8e-62 242.3 202 55.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.0e-62 241.9 207 54.1
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 5.0e-62 241.9 198 56.1
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 6.5e-62 241.5 198 55.6
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.1e-61 240.7 195 56.4
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.1e-61 240.7 198 57.1
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.5e-61 240.4 225 53.8
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.9e-61 240.0 227 53.3
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-61 240.0 198 55.1
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.5e-61 239.6 223 54.3
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 3.2e-61 239.2 211 55.9
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.2e-61 239.2 204 53.4
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-61 239.2 219 54.8
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-61 239.2 219 54.8
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-61 238.8 194 56.2
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.2e-61 238.8 204 53.9
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 4.2e-61 238.8 198 56.1
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 7.2e-61 238.0 219 53.0
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 9.4e-61 237.7 202 54.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.6e-60 236.9 205 54.6
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.1e-60 236.5 235 51.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.1e-60 236.5 216 51.9
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.6e-60 235.7 195 54.9
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.6e-60 235.7 223 53.4
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 4.7e-60 235.3 208 52.4
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 6.1e-60 235.0 234 52.1
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 8.0e-60 234.6 197 54.8
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.0e-59 234.2 207 52.7
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.0e-59 234.2 218 50.9
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.4e-59 233.8 222 50.9
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.4e-59 233.8 222 50.9
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 5.2e-59 231.9 187 56.7
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 5.2e-59 231.9 230 48.3
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 8.8e-59 231.1 219 51.6
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.5e-58 230.3 207 52.7
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 3.4e-58 229.2 198 54.5
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.4e-58 228.8 219 52.1
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 4.4e-58 228.8 207 52.2
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 7.5e-58 228.0 223 49.3
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.8e-57 226.1 225 51.6
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.8e-57 226.1 225 51.6
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 8.3e-57 224.6 207 51.7
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.1e-56 224.2 196 54.1
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 5.4e-56 221.9 206 51.5
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.9e-55 218.4 215 48.4
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.6e-54 214.9 193 51.3
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.3e-53 212.6 224 49.1
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.3e-53 212.6 189 50.8
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 2.1e-52 209.9 197 49.2
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.1e-52 209.9 198 50.0
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.7e-52 208.8 176 56.8
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 8.0e-52 208.0 210 48.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 2.3e-51 206.5 218 45.9
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.5e-50 203.8 187 53.5
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.4e-50 202.2 198 48.0
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 4.9e-49 198.7 196 46.9
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.4e-48 195.3 223 43.5
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.0e-47 193.4 223 43.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.9e-46 189.5 157 56.7
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-45 187.6 177 52.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 8.9e-43 177.9 135 61.5
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-40 171.0 223 44.8
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.4e-40 169.9 221 45.2
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.6e-39 165.6 223 40.8
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.3e-38 163.3 190 39.5
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 4.7e-36 155.6 127 55.1
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.8e-35 153.7 176 45.5
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.9e-35 151.4 144 49.3
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 6.4e-33 145.2 223 34.1
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.9e-32 143.7 115 61.7
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 9.2e-32 141.4 105 62.9
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.0e-31 138.7 103 62.1
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 6.0e-31 138.7 145 51.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 5.1e-30 135.6 120 52.5
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 6.6e-30 135.2 113 59.3
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.6e-30 134.8 115 57.4
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.1e-29 134.4 95 64.2
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 5.6e-29 132.1 210 36.2
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.1e-28 130.2 107 53.3
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-24 117.5 101 58.4
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.4e-24 116.7 156 42.9
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-23 113.6 123 43.9
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 2.7e-23 113.2 136 43.4
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-22 110.9 117 46.2
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 5.1e-22 109.0 105 49.5
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.9e-21 107.1 107 46.7
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.2e-20 104.4 173 32.9
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.8e-20 103.2 90 50.0
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-19 100.9 112 42.9
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 3.1e-19 99.8 108 52.8
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 8.9e-19 98.2 148 35.8
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.4e-18 95.9 75 61.3
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 7.6e-18 95.1 91 58.2
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-17 94.4 84 51.2
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-15 87.8 98 40.8
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 5.6e-13 79.0 60 56.7
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 3.6e-12 76.3 90 40.0


User provided reference genes

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