Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 3.7e-164 581.6 328 100.0
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.2e-143 513.5 332 89.5
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.1e-102 377.5 341 73.6
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.3e-76 290.8 336 63.1
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 1.4e-57 227.6 334 48.2
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.8e-33 147.5 346 40.5
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.0e-33 146.4 346 39.9
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.0e-33 146.4 342 38.9
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.2e-32 144.8 342 35.7
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 7.0e-30 135.6 354 37.6
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 9.1e-30 135.2 332 38.6
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 1.7e-28 131.0 353 42.2
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 5.0e-28 129.4 341 36.7
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 8.5e-28 128.6 351 42.7
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.1e-27 128.3 335 39.4
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.2e-27 126.3 231 39.0
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.6e-26 124.4 351 36.2
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 4.7e-26 122.9 378 39.2
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 4.7e-26 122.9 353 40.8
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 3.0e-25 120.2 344 38.4
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 6.8e-25 119.0 234 38.0
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 4.4e-24 116.3 340 37.6
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 5.7e-24 115.9 356 34.0
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 7.5e-24 115.5 339 37.8
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 1.3e-23 114.8 382 38.0
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.3e-23 114.8 238 36.6
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.7e-23 114.4 348 36.8
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.7e-23 114.4 351 35.0
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.7e-23 114.4 336 31.5
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.2e-23 114.0 350 35.7
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 6.3e-23 112.5 340 31.8
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.8e-22 110.9 355 34.4
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.4e-22 110.5 370 38.1
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 4.1e-22 109.8 240 35.8
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 7.0e-22 109.0 363 33.9
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.0e-21 107.5 344 36.6
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.5e-21 106.3 332 32.2
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.0e-20 105.1 331 31.4
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 1.0e-20 105.1 259 34.7
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.6e-20 102.4 335 32.5
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 6.6e-20 102.4 335 35.2
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.5e-19 101.3 363 30.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.5e-19 101.3 334 33.5
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.5e-19 101.3 370 36.8
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.5e-19 101.3 360 31.1
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.9e-19 100.9 331 32.6
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.3e-19 99.8 346 34.1
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.6e-19 99.4 334 32.9
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 9.5e-19 98.6 392 32.7
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.2e-18 98.2 382 35.1
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.6e-18 97.8 348 35.9
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.6e-18 97.8 346 37.6
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.6e-18 97.8 356 34.6
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 1.6e-18 97.8 247 32.4
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.1e-18 97.4 351 36.2
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 4.7e-18 96.3 387 33.9
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 6.1e-18 95.9 331 37.8
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 6.1e-18 95.9 347 30.8
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.0e-17 95.1 340 37.1
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.4e-17 94.7 347 32.9
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 1.8e-17 94.4 331 39.6
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.3e-17 94.0 304 32.2
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 3.0e-17 93.6 208 49.0
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.0e-17 93.6 386 33.7
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 5.2e-17 92.8 345 33.9
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 6.8e-17 92.4 340 37.4
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.2e-16 91.7 345 29.9
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.2e-16 91.7 332 30.7
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 1.2e-16 91.7 336 31.5
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 2.0e-16 90.9 358 29.9
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 2.6e-16 90.5 352 32.4
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.4e-16 90.1 245 33.1
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 7.5e-16 89.0 337 38.0
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 1.3e-15 88.2 358 31.8
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.7e-15 87.8 345 32.5
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 2.2e-15 87.4 395 32.2
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.2e-15 87.4 330 33.9
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.9e-15 86.3 335 32.5
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 6.4e-15 85.9 340 34.1
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 6.4e-15 85.9 268 28.7
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-14 84.7 348 31.6
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.4e-14 84.7 388 33.5
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.8e-14 84.3 203 43.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.8e-14 84.3 347 33.4
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 2.4e-14 84.0 147 55.1
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 4.1e-14 83.2 357 33.9
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 7.0e-14 82.4 236 33.9
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.2e-13 81.6 241 33.2
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.2e-13 81.6 196 43.9
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.6e-13 81.3 234 32.5
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 2.7e-13 80.5 253 31.2
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 4.6e-13 79.7 387 32.3
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 5.9e-13 79.3 341 27.6
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 7.8e-13 79.0 335 26.6
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 1.0e-12 78.6 340 33.2
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 1.3e-12 78.2 270 38.5
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 2.3e-12 77.4 335 34.9
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 2.3e-12 77.4 281 37.7
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 2.3e-12 77.4 353 33.1
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 3.0e-12 77.0 339 26.8
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 3.0e-12 77.0 321 32.7
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 5.0e-12 76.3 265 29.4
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 5.0e-12 76.3 273 28.6
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 8.6e-12 75.5 356 28.1
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 8.6e-12 75.5 374 24.9
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 1.1e-11 75.1 336 26.5
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 1.5e-11 74.7 345 29.6
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.3e-11 73.6 334 35.3
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.3e-11 73.6 341 30.5
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.3e-11 73.2 330 29.4
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 5.6e-11 72.8 347 29.4
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 9.5e-11 72.0 250 29.6
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 9.5e-11 72.0 415 24.6
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 1.2e-10 71.6 166 46.4
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.6e-10 71.2 253 28.9
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 2.1e-10 70.9 239 30.5
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.6e-10 70.1 342 27.2
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 4.7e-10 69.7 95 41.1
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 4.7e-10 69.7 344 25.0
GSVIVG01009951001 Vitis vinifera HOM05D004095 ORTHO05D003197 4.7e-10 69.7 143 53.8
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.0e-09 68.6 230 27.8
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 1.0e-09 68.6 264 33.3
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 2.3e-09 67.4 232 29.3
VMungo0647G0628 Vigna mungo HOM05D013708 ORTHO05D003197 3.1e-09 67.0 199 43.7
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 5.2e-09 66.2 234 30.8
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 5.2e-09 66.2 336 31.5
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 8.9e-09 65.5 233 28.3
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 8.9e-09 65.5 258 28.3
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 1.2e-08 65.1 332 32.8
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 1.2e-08 65.1 103 40.8
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 1.5e-08 64.7 332 33.1
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 2.0e-08 64.3 236 28.8
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 2.0e-08 64.3 421 23.8
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 2.0e-08 64.3 259 27.8
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 3.4e-08 63.5 243 29.2
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 3.4e-08 63.5 233 27.9
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 3.4e-08 63.5 233 27.9
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 5.8e-08 62.8 339 30.4
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 5.8e-08 62.8 189 42.9
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.5e-08 62.4 225 30.7
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 7.5e-08 62.4 378 32.8
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 1.7e-07 61.2 346 32.9
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 1.7e-07 61.2 346 32.9
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 1.7e-07 61.2 159 34.0
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 2.2e-07 60.8 199 43.7
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 2.9e-07 60.5 365 32.6
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 2.9e-07 60.5 172 49.4
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 3.7e-07 60.1 187 39.0
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.1e-06 58.5 274 29.6
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 1.1e-06 58.5 335 27.2
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 2.4e-06 57.4 85 37.6
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.2e-06 57.0 346 32.4
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 3.2e-06 57.0 96 35.4
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 4.1e-06 56.6 225 26.2


User provided reference genes

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