Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 3.1e-113 411.8 203 100.0
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.3e-76 289.3 204 75.5
MELO3C011356.2 Cucumis melo HOM05D007731 ORTHO05D008483 9.9e-59 230.7 139 80.6
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 9.9e-59 230.7 208 61.5
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 2.1e-32 143.3 236 43.6
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 3.7e-29 132.5 198 46.0
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 1.2e-27 127.5 231 40.3
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 3.4e-27 125.9 215 42.8
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 2.2e-26 123.2 200 42.0
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 1.9e-25 120.2 180 46.1
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 3.2e-25 119.4 199 44.7
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 4.2e-25 119.0 226 42.5
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 5.5e-25 118.6 204 41.2
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 7.2e-25 118.2 185 42.7
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 9.3e-25 117.9 174 46.0
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 1.6e-24 117.1 224 42.0
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 3.5e-24 115.9 221 38.0
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 3.5e-24 115.9 213 39.9
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 7.9e-24 114.8 205 42.0
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 7.9e-24 114.8 220 39.5
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 7.9e-24 114.8 207 38.6
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 1.9e-22 110.2 204 40.7
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 1.9e-22 110.2 250 36.0
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 5.7e-22 108.6 220 38.6
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 7.4e-22 108.2 182 40.1
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 7.4e-22 108.2 209 42.1
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.3e-21 107.5 179 46.4
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.2e-21 106.7 179 42.5
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 4.8e-21 105.5 239 36.8
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 6.3e-21 105.1 182 43.4
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 6.3e-21 105.1 141 45.4
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 8.2e-21 104.8 182 44.0
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.1e-20 104.4 179 41.9
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.1e-20 104.4 181 44.8
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 1.8e-20 103.6 221 34.8
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 3.1e-20 102.8 169 43.2
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 5.3e-20 102.1 224 39.3
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 5.3e-20 102.1 173 43.4
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 5.3e-20 102.1 201 41.3
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.5e-19 100.5 223 39.5
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 2.6e-19 99.8 222 38.3
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 3.4e-19 99.4 183 43.2
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 5.9e-19 98.6 198 37.9
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 1.0e-18 97.8 196 40.3
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 2.2e-18 96.7 179 40.8
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 2.9e-18 96.3 167 42.5
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 5.0e-18 95.5 198 38.4
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 6.5e-18 95.1 172 41.9
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.9e-17 93.6 204 35.8
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 3.2e-17 92.8 193 37.3
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 9.4e-17 91.3 167 38.3
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.2e-16 90.9 229 34.9
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 1.6e-16 90.5 176 38.1
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 2.1e-16 90.1 231 34.2
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 2.1e-16 90.1 178 39.9
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.7e-16 89.7 169 40.2
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 1.0e-15 87.8 176 35.2
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 8.8e-15 84.7 185 36.8
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 8.8e-15 84.7 192 37.5
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.5e-14 84.0 188 33.5
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 1.5e-14 84.0 184 38.6
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.5e-14 84.0 185 36.2
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.5e-14 83.2 216 36.1
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 3.3e-14 82.8 228 31.6
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 1.3e-13 80.9 125 44.0
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 1.7e-13 80.5 256 30.9
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 2.2e-13 80.1 227 34.8
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 2.8e-13 79.7 159 40.9
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 3.7e-13 79.3 203 33.0
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 1.1e-12 77.8 206 34.0
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 1.8e-12 77.0 121 41.3
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 9.1e-12 74.7 168 37.5
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.2e-11 74.3 210 31.0
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.0e-11 73.6 225 33.3
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 4.5e-11 72.4 225 33.8
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 5.9e-11 72.0 210 31.0
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.0e-10 71.2 163 35.6
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 1.0e-10 71.2 159 34.6
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 6.5e-10 68.6 149 36.9
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 5.5e-09 65.5 185 33.5
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 2.7e-08 63.2 183 32.2
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 3.6e-08 62.8 124 38.7
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 4.7e-08 62.4 152 38.2
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 7.9e-08 61.6 46 67.4
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 1.0e-07 61.2 189 30.7
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.0e-07 61.2 96 38.5
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 1.8e-07 60.5 45 60.0
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 2.3e-07 60.1 185 31.4
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.3e-07 60.1 96 38.5
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.3e-07 60.1 96 38.5
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 3.0e-07 59.7 104 38.5
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.0e-07 59.7 96 38.5
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.0e-07 59.7 102 33.3
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.0e-07 59.7 96 38.5
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.0e-07 59.7 112 36.6
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 3.9e-07 59.3 185 31.4
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 3.9e-07 59.3 198 28.8
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.9e-07 59.3 117 33.3
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 5.1e-07 58.9 58 56.9
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.1e-07 58.9 117 33.3
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 6.7e-07 58.5 165 33.3
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 6.7e-07 58.5 98 34.7
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 6.7e-07 58.5 119 34.5
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 6.7e-07 58.5 96 37.5
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 6.7e-07 58.5 188 33.5
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 6.7e-07 58.5 119 36.1
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 8.8e-07 58.2 179 32.4
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 8.8e-07 58.2 167 28.7
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.1e-06 57.8 124 36.3
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 1.1e-06 57.8 129 35.7
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.5e-06 57.4 97 38.1
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 2.0e-06 57.0 110 36.4
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 2.0e-06 57.0 110 36.4
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 2.0e-06 57.0 96 36.5
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 2.0e-06 57.0 104 36.5
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 2.0e-06 57.0 169 32.0
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 2.6e-06 56.6 96 36.5
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 3.3e-06 56.2 171 28.1
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.3e-06 56.2 154 35.7
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 3.3e-06 56.2 95 36.8
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 5.7e-06 55.5 44 52.3
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 5.7e-06 55.5 44 59.1
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 5.7e-06 55.5 160 30.6
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 5.7e-06 55.5 97 38.1
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 5.7e-06 55.5 152 32.2
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 7.4e-06 55.1 115 35.7
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 7.4e-06 55.1 200 28.5
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 9.7e-06 54.7 118 33.1
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 9.7e-06 54.7 120 33.3


User provided reference genes

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