Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 1.7e-177 625.9 330 100.0
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 1.2e-170 603.2 330 96.7
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 2.7e-122 442.6 331 76.4
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 2.7e-106 389.4 335 67.2
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 1.3e-105 387.1 338 66.0
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 1.8e-105 386.7 303 68.3
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 8.7e-105 384.4 284 72.5
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 2.5e-104 382.9 340 63.5
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 2.5e-104 382.9 251 76.1
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 7.4e-104 381.3 330 66.7
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 9.6e-104 380.9 329 66.9
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 2.8e-103 379.4 336 66.1
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 6.2e-103 378.3 280 73.9
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 2.4e-102 376.3 245 76.3
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 2.4e-102 376.3 329 66.3
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 1.5e-101 373.6 237 78.9
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.5e-101 373.6 245 75.9
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 2.0e-101 373.2 333 62.8
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 3.4e-101 372.5 331 63.7
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 4.5e-101 372.1 242 77.7
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 7.6e-101 371.3 237 78.9
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 1.0e-100 370.9 220 84.1
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 2.9e-100 369.4 309 65.0
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 4.9e-100 368.6 312 64.1
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 1.4e-99 367.1 333 60.1
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 1.9e-99 366.7 320 63.1
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 2.5e-99 366.3 342 65.2
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 4.2e-99 365.5 331 64.4
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 5.5e-99 365.2 236 77.5
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 7.1e-99 364.8 246 74.8
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 7.1e-99 364.8 219 81.7
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 2.7e-98 362.8 241 74.7
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 1.3e-97 360.5 217 88.5
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 5.1e-97 358.6 322 63.7
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 8.7e-97 357.8 218 79.8
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 8.7e-97 357.8 311 64.6
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 1.1e-96 357.5 339 61.1
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.1e-96 357.5 221 79.6
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 1.5e-96 357.1 248 73.0
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 1.5e-96 357.1 235 74.5
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 1.9e-96 356.7 215 81.9
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 3.3e-96 355.9 227 76.7
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 4.3e-96 355.5 238 76.5
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 4.3e-96 355.5 233 72.5
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 7.4e-96 354.8 233 74.2
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 7.4e-96 354.8 218 76.1
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 3.7e-95 352.4 210 82.9
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 4.8e-95 352.1 258 70.5
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.1e-94 350.9 243 73.7
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.4e-94 350.5 258 70.2
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 2.4e-94 349.7 216 77.8
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 1.5e-93 347.1 286 66.8
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 5.8e-93 345.1 211 76.3
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 1.6e-90 337.0 204 80.4
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 2.1e-90 336.7 339 59.0
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 3.5e-90 335.9 243 71.6
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 4.6e-90 335.5 361 55.1
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 7.9e-90 334.7 325 59.7
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 1.3e-89 334.0 277 66.4
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 1.8e-89 333.6 199 78.4
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 1.1e-88 330.9 330 58.8
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 1.9e-88 330.1 212 73.6
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 7.4e-88 328.2 218 75.7
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 1.3e-87 327.4 198 81.8
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 3.7e-87 325.9 324 57.1
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 1.1e-86 324.3 325 59.1
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.4e-86 323.9 236 69.9
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 1.5e-85 320.5 210 71.9
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 2.6e-85 319.7 277 59.2
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 7.7e-85 318.2 210 75.7
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 7.7e-85 318.2 196 79.6
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.2e-84 316.6 197 77.2
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 5.0e-84 315.5 241 66.0
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 1.4e-83 313.9 346 52.9
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 2.5e-83 313.2 196 78.6
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 1.2e-82 310.8 222 70.7
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 3.6e-82 309.3 174 83.9
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 3.9e-81 305.8 234 66.2
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 9.7e-80 301.2 296 60.8
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 9.7e-80 301.2 216 71.8
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 2.8e-79 299.7 320 54.1
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 3.7e-79 299.3 213 70.9
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 1.8e-78 297.0 332 50.6
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 6.9e-78 295.0 221 67.4
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 1.2e-77 294.3 215 68.4
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 2.6e-77 293.1 202 67.8
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 7.7e-77 291.6 338 53.0
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 2.2e-76 290.0 232 66.8
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 2.5e-75 286.6 213 68.1
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 2.1e-74 283.5 229 64.6
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 2.1e-74 283.5 215 63.7
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 3.9e-73 279.3 206 62.6
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 7.2e-67 258.5 242 52.9
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 2.1e-66 256.9 359 49.3
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 2.1e-66 256.9 359 49.3
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 3.3e-64 249.6 207 62.8
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 5.7e-64 248.8 335 51.3
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 5.3e-62 242.3 195 65.6
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 2.9e-60 236.5 174 66.1
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 1.0e-57 228.0 171 66.1
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 3.0e-57 226.5 145 79.3
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 7.5e-56 221.9 232 50.0
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.4e-54 217.6 145 75.2
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 2.4e-54 216.9 196 59.7
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 2.7e-53 213.4 147 70.1
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 3.5e-53 213.0 213 52.6
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 3.5e-53 213.0 215 52.1
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 6.1e-50 202.2 150 64.7
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 2.0e-48 197.2 191 53.4
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 5.0e-44 182.6 234 48.7
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 1.1e-35 154.8 90 82.2
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.6e-34 151.0 90 80.0
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 4.0e-33 146.4 91 74.7
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 1.2e-26 124.8 233 33.5
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 9.8e-24 115.2 69 87.0
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 6.6e-20 102.4 167 34.1
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 3.3e-19 100.1 154 39.0
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 4.3e-19 99.8 61 83.6
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 7.3e-19 99.0 175 34.3
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 1.6e-13 81.3 48 83.3
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 3.3e-11 73.6 48 83.3
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 8.1e-10 68.9 67 55.2
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 5.4e-06 56.2 33 87.9


User provided reference genes

Program Settings