Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 4.2e-241 837.8 481 100.0
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 8.2e-229 797.0 483 95.2
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.0e-202 710.3 485 84.1
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 4.3e-185 651.7 486 77.2
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 9.9e-150 534.3 489 68.3
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 2.4e-127 459.9 492 62.6
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 2.4e-127 459.9 432 62.7
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 5.0e-125 452.2 492 59.6
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 8.4e-125 451.4 491 60.7
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 2.5e-124 449.9 488 62.1
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.0e-122 444.5 500 57.6
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 3.9e-122 442.6 487 62.0
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.5e-121 440.7 502 57.2
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 2.5e-121 439.9 496 60.3
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 9.7e-121 438.0 502 57.0
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.6e-120 437.2 494 59.9
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.9e-116 423.7 493 58.4
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.5e-116 423.3 489 56.4
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 2.5e-116 423.3 490 55.7
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 3.2e-116 422.9 493 60.4
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 7.2e-116 421.8 469 61.2
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 9.4e-116 421.4 492 55.3
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.6e-115 419.5 492 60.0
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.6e-115 419.5 489 55.2
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 3.6e-115 419.5 495 59.4
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 6.1e-115 418.7 489 56.4
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 6.1e-115 418.7 496 59.7
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-114 417.5 498 60.0
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.3e-114 416.8 498 60.0
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.9e-114 416.0 498 59.6
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-112 411.0 487 59.8
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.7e-112 410.6 489 53.8
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.2e-112 410.2 494 54.7
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 4.8e-112 409.1 480 59.4
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 8.2e-112 408.3 430 64.0
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.4e-111 406.8 488 56.4
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.4e-111 406.8 496 55.6
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 3.1e-111 406.4 482 56.0
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.1e-111 406.0 487 59.3
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.3e-111 405.6 491 55.8
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.1e-111 404.8 486 56.0
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.0e-110 403.7 495 57.2
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.4e-110 402.9 490 55.3
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 5.9e-110 402.1 514 53.5
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.0e-109 401.4 502 53.0
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.2e-109 400.2 482 57.1
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.2e-109 400.2 482 56.2
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 5.0e-109 399.1 499 55.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.4e-108 397.5 495 52.3
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.4e-108 397.5 499 57.7
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.5e-108 396.7 482 54.1
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 4.2e-108 396.0 491 54.0
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 7.2e-108 395.2 496 53.0
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 9.4e-108 394.8 497 54.3
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.6e-107 394.0 542 52.8
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 4.7e-107 392.5 492 55.9
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 4.7e-107 392.5 493 56.4
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 6.1e-107 392.1 490 54.1
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.4e-106 391.0 464 55.6
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.9e-106 389.4 472 59.7
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 6.7e-106 388.7 491 54.4
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 6.7e-106 388.7 500 56.0
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.7e-106 388.7 472 59.5
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 7.4e-105 385.2 479 55.9
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 9.7e-105 384.8 486 55.8
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.3e-104 384.4 494 53.6
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 2.8e-104 383.3 479 54.7
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 3.7e-104 382.9 507 52.3
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 4.8e-104 382.5 500 52.0
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.4e-103 380.9 530 53.6
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.5e-102 377.5 505 51.3
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.6e-102 376.7 455 56.9
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 3.5e-102 376.3 499 54.9
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 4.5e-102 375.9 508 52.0
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.3e-101 374.4 487 54.0
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.3e-101 374.4 473 56.9
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 5.0e-101 372.5 469 53.5
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.5e-101 372.1 491 52.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 6.5e-101 372.1 497 54.5
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.9e-100 370.5 507 52.9
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.5e-100 370.2 491 51.9
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 7.2e-100 368.6 446 56.1
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.2e-99 367.9 489 51.3
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.6e-99 366.3 491 51.5
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.1e-97 361.3 492 51.6
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.4e-97 358.6 489 55.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 2.2e-96 357.1 437 56.1
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.2e-96 357.1 451 57.2
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 7.0e-95 352.1 503 51.9
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 7.0e-95 352.1 596 46.5
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.5e-92 344.4 498 51.8
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 3.2e-92 343.2 464 53.0
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 4.2e-92 342.8 484 48.6
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.4e-92 341.7 327 68.2
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 3.6e-91 339.7 490 48.4
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 5.2e-90 335.9 380 54.7
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 8.8e-90 335.1 478 51.7
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 9.8e-89 331.6 469 48.8
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.7e-88 330.9 482 50.6
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 6.3e-88 328.9 482 53.5
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 4.1e-87 326.2 483 50.9
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 7.0e-87 325.5 468 50.6
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.6e-86 324.3 475 51.8
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 2.7e-86 323.6 490 50.8
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 8.5e-85 318.5 370 58.1
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 5.5e-84 315.8 490 50.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.5e-84 315.8 473 50.5
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 8.0e-83 312.0 442 51.1
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 9.8e-81 305.1 484 45.2
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.7e-80 304.3 478 49.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.7e-80 303.1 396 54.0
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.4e-79 301.2 457 49.9
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 6.6e-77 292.4 579 40.4
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.2e-75 288.1 480 50.0
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.0e-74 285.0 447 46.8
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 5.2e-74 282.7 556 40.1
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.6e-73 280.4 259 67.2
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.2e-72 277.3 465 42.6
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 4.9e-72 276.2 493 45.4
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.7e-69 267.7 431 47.1
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.4e-66 258.1 276 58.3
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 6.4e-64 249.2 443 43.6
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 8.3e-64 248.8 269 59.1
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 5.4e-63 246.1 450 43.6
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 5.4e-63 246.1 415 45.5
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.9e-56 223.8 289 55.0
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 6.2e-51 206.1 287 54.4
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 9.9e-49 198.7 393 35.6
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 9.6e-44 182.2 464 33.6
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.6e-41 174.1 274 43.1
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 8.1e-35 152.5 442 32.6
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 4.6e-30 136.7 173 53.2
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.0e-29 135.6 444 33.1
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.0e-25 121.3 196 44.4
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.6e-25 119.4 298 31.9
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.7e-24 118.2 92 67.4
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.4e-23 114.4 67 79.1
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.1e-22 111.3 192 42.2
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.9e-20 104.8 70 74.3
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 4.3e-20 103.6 180 41.7
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.6e-19 101.7 389 30.3
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 8.1e-19 99.4 172 43.6
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.8e-18 98.2 108 50.0
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.7e-16 91.7 200 38.5
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.9e-16 90.9 155 46.5
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 8.4e-16 89.4 159 40.3
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.4e-15 88.6 198 38.4
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.5e-15 86.7 102 51.0
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.6e-14 83.6 114 43.0
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.3e-13 82.0 258 35.7
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 2.1e-11 74.7 274 27.0
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 8.2e-11 72.8 326 28.2
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.4e-10 71.2 145 47.6
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 9.0e-10 69.3 109 41.3
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 2.0e-09 68.2 79 55.7
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 5.0e-08 63.5 110 44.5
Cre06.g280800 Chlamydomonas reinhardtii HOM05D004401 ORTHO05D005169 1.4e-07 62.0 349 27.2
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.5e-07 61.2 72 43.1


User provided reference genes

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