Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 0.0e+00 1390.2 689 100.0
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 0.0e+00 1125.5 701 82.7
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 0.0e+00 1114.8 730 80.7
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 1.3e-288 996.1 684 75.0
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 3.3e-146 523.1 688 43.5
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 3.1e-136 490.0 700 41.4
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.2e-132 478.0 680 42.5
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 2.1e-129 467.2 713 41.5
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.2e-127 461.5 679 41.2
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 1.5e-127 461.1 682 42.1
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 8.4e-126 455.3 716 40.5
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 3.5e-124 449.9 689 41.9
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.6e-121 441.0 688 40.7
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 1.8e-120 437.6 692 40.2
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 2.4e-120 437.2 679 40.6
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.2e-119 434.9 681 38.3
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.5e-119 434.5 682 40.2
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 9.9e-119 431.8 684 41.1
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 4.9e-118 429.5 688 39.2
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.1e-117 428.3 683 40.4
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.4e-117 427.9 701 40.8
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 1.9e-117 427.6 677 38.1
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 3.2e-117 426.8 683 38.5
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 4.2e-117 426.4 679 39.0
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.1e-116 424.1 683 40.4
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 3.5e-116 423.3 703 39.8
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 3.5e-116 423.3 610 42.6
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 7.9e-116 422.2 683 40.4
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.8e-115 421.0 680 39.4
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 3.9e-115 419.9 682 40.0
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 8.7e-115 418.7 609 40.7
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.5e-114 417.9 683 40.1
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 1.5e-114 417.9 682 40.3
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 3.3e-114 416.8 682 40.2
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 7.4e-114 415.6 684 40.5
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 6.2e-113 412.5 685 38.2
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.8e-112 411.0 683 39.2
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.0e-112 408.7 713 38.8
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 4.3e-106 389.8 675 39.6
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.6e-105 387.9 694 39.8
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.9e-104 382.5 698 37.1
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.5e-103 381.3 688 37.9
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 3.4e-103 380.2 694 37.3
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 5.8e-103 379.4 702 36.2
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 1.3e-102 378.3 551 42.1
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.2e-102 377.5 631 36.9
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 2.2e-102 377.5 683 35.7
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 4.2e-101 373.2 565 39.8
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 3.9e-99 366.7 695 34.8
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 6.7e-99 365.9 683 37.8
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 9.7e-98 362.1 643 37.9
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.6e-97 361.3 702 35.6
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 3.7e-97 360.1 691 35.2
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 6.3e-97 359.4 682 36.4
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 5.3e-96 356.3 676 34.8
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 5.3e-96 356.3 696 34.2
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 2.0e-95 354.4 694 35.0
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 7.6e-95 352.4 576 40.1
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 1.4e-93 348.2 685 34.2
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.9e-93 347.8 679 34.9
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.5e-93 347.4 723 35.7
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 5.5e-93 346.3 688 34.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 1.2e-92 345.1 684 34.9
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 1.6e-92 344.7 703 34.3
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.6e-92 344.7 689 35.0
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 7.9e-92 342.4 694 34.4
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 1.9e-90 337.8 561 38.3
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 2.5e-90 337.4 688 33.9
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 3.3e-90 337.0 593 38.8
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 5.7e-90 336.3 652 34.7
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 9.7e-90 335.5 720 33.2
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.3e-89 335.1 676 34.2
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 6.3e-89 332.8 678 34.2
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 4.1e-88 330.1 677 34.1
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 5.9e-87 326.2 688 34.2
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 5.0e-86 323.2 610 36.6
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 2.7e-84 317.4 678 35.0
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.1e-82 312.0 563 37.1
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 2.4e-80 304.3 677 33.7
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.2e-78 297.7 590 35.3
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 8.5e-78 295.8 501 36.9
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 3.6e-76 290.4 619 33.3
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 3.9e-75 287.0 717 30.0
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 1.6e-71 275.0 687 31.3
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 1.7e-70 271.6 676 32.1
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.2e-70 271.2 565 34.7
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.1e-69 268.9 686 30.5
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 4.2e-69 266.9 412 41.3
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 3.7e-65 253.8 656 31.1
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.7e-63 247.7 428 39.3
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.2e-62 244.6 429 37.8
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 1.6e-60 238.4 397 39.5
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.2e-58 232.3 366 40.7
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 7.5e-58 229.6 669 29.1
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 9.8e-58 229.2 669 29.1
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 5.4e-56 223.4 695 29.4
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 7.7e-55 219.5 685 28.8
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 4.1e-48 197.2 376 35.6
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 4.5e-47 193.7 323 35.0
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 3.7e-41 174.1 328 39.0
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.8e-31 139.8 198 42.4
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 2.0e-26 125.2 370 28.1
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.9e-24 118.6 198 40.4
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.5e-18 99.0 174 34.5
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 9.9e-18 96.3 743 22.3
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 3.8e-17 94.4 583 24.9
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 9.2e-16 89.7 95 48.4
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 6.0e-15 87.0 391 27.4
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.9e-13 82.0 141 38.3
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.3e-08 63.2 78 44.9
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.3e-08 63.2 78 44.9
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.0e-06 59.7 123 33.3
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 2.3e-06 58.5 325 24.6


User provided reference genes

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