Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016890 Cucumis sativus L. HOM05D000135 ORTHO05D000203 7.6e-61 237.7 191 100.0
MELO3C020900.2 Cucumis melo HOM05D000135 ORTHO05D000203 3.3e-56 222.2 119 96.6
ClCG02G012820 Citrullus lanatus HOM05D000135 ORTHO05D000203 1.3e-39 167.2 115 74.8
Sed0008130 Sechium edule HOM05D000135 ORTHO05D000203 1.6e-39 166.8 117 75.2
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 2.1e-18 96.7 118 51.7
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 2.0e-16 90.1 87 49.4
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 3.3e-16 89.4 126 45.2
Atru.chr3.341 Acer truncatum HOM05D000135 ORTHO05D000203 5.7e-16 88.6 109 46.8
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 5.7e-16 88.6 88 51.1
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 7.5e-16 88.2 87 55.2
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 9.7e-16 87.8 115 43.5
QL06p041758 Quercus lobata HOM05D000135 ORTHO05D000203 9.7e-16 87.8 100 48.0
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 1.3e-15 87.4 112 45.5
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 3.7e-15 85.9 117 46.2
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 3.7e-15 85.9 117 46.2
arahy.Tifrunner.gnm1.ann1.D3D30P Arachis hypogaea HOM05D000135 ORTHO05D000203 8.2e-15 84.7 91 49.5
CANSAT01G1352 Cannabis sativa HOM05D000135 ORTHO05D000203 1.8e-14 83.6 105 47.6
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 1.8e-14 83.6 104 49.0
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.8e-14 83.6 109 47.7
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 7.0e-14 81.6 108 44.4
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 9.1e-14 81.3 110 45.5
arahy.Tifrunner.gnm1.ann1.77Y3FG Arachis hypogaea HOM05D000135 ORTHO05D000203 2.0e-13 80.1 82 51.2
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 2.0e-13 80.1 108 43.5
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 3.5e-13 79.3 113 45.1
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 7.7e-13 78.2 113 45.1
GSVIVG01031752001 Vitis vinifera HOM05D000135 ORTHO05D000203 1.0e-12 77.8 88 50.0
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.3e-12 77.4 111 43.2
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 1.3e-12 77.4 86 48.8
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.7e-12 77.0 101 47.5
arahy.Tifrunner.gnm1.ann1.JMIG5W Arachis hypogaea HOM05D000135 ORTHO05D000203 2.9e-12 76.3 79 54.4
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 2.9e-12 76.3 86 47.7
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.9e-12 76.3 86 47.7
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 2.9e-12 76.3 108 40.7
Glyma.05G085200 Glycine max HOM05D000135 ORTHO05D000203 3.8e-12 75.9 82 46.3
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 3.8e-12 75.9 109 43.1
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 3.8e-12 75.9 85 48.2
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.0e-12 75.5 86 47.7
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.0e-12 75.5 86 47.7
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 8.5e-12 74.7 75 50.7
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 8.5e-12 74.7 89 44.9
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 8.5e-12 74.7 89 44.9
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.1e-11 74.3 97 43.3
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.1e-11 74.3 75 50.7
Nitab4.5_0000292g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.1e-11 74.3 75 49.3
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.5e-11 73.9 75 52.0
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 1.5e-11 73.9 75 49.3
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 2.5e-11 73.2 88 47.7
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 2.5e-11 73.2 109 44.0
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 2.5e-11 73.2 98 43.9
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 3.2e-11 72.8 88 47.7
Glyma.17G175400 Glycine max HOM05D000135 ORTHO05D000203 3.2e-11 72.8 100 42.0
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 4.2e-11 72.4 110 41.8
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 4.2e-11 72.4 88 45.5
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 4.2e-11 72.4 75 46.7
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 5.5e-11 72.0 104 42.3
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 5.5e-11 72.0 86 45.3
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 5.5e-11 72.0 86 45.3
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 5.5e-11 72.0 75 46.7
Medtr5g017540 Medicago truncatula HOM05D000135 ORTHO05D000203 5.5e-11 72.0 77 45.5
Nitab4.5_0001824g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 5.5e-11 72.0 98 42.9
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 7.2e-11 71.6 110 42.7
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 7.2e-11 71.6 102 45.1
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 9.4e-11 71.2 101 42.6
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 9.4e-11 71.2 101 42.6
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 1.2e-10 70.9 110 43.6
Sopen02g015130 Solanum pennellii HOM05D000135 ORTHO05D000203 1.2e-10 70.9 89 41.6
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.6e-10 70.5 99 45.5
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 1.6e-10 70.5 88 45.5
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 1.6e-10 70.5 101 42.6
Solyc02g065000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 1.6e-10 70.5 104 40.4
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.6e-10 70.5 78 44.9
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 1.6e-10 70.5 88 44.3
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 2.1e-10 70.1 100 43.0
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 2.1e-10 70.1 102 48.0
PGSC0003DMG400039532 Solanum tuberosum HOM05D000135 ORTHO05D000203 2.1e-10 70.1 89 41.6
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 3.6e-10 69.3 80 48.8
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 3.6e-10 69.3 112 39.3
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 3.6e-10 69.3 112 39.3
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 4.7e-10 68.9 103 44.7
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 4.7e-10 68.9 88 45.5
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 4.7e-10 68.9 75 42.7
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 4.7e-10 68.9 76 43.4
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 6.1e-10 68.6 88 45.5
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 6.1e-10 68.6 85 48.2
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 8.0e-10 68.2 101 40.6
ECA234G2126 Erigeron canadensis HOM05D000135 ORTHO05D000203 1.0e-09 67.8 87 42.5
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 1.0e-09 67.8 95 44.2
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 1.4e-09 67.4 96 45.8
Nitab4.5_0000728g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.4e-09 67.4 79 40.5
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.4e-09 67.4 88 44.3
Carub.0003s2954 Capsella rubella HOM05D000135 ORTHO05D000203 1.8e-09 67.0 110 40.0
Thhalv10022869m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 1.8e-09 67.0 109 41.3
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 1.8e-09 67.0 98 40.8
PGSC0003DMG402025892 Solanum tuberosum HOM05D000135 ORTHO05D000203 1.8e-09 67.0 88 42.0
TPR.G21277 Trifolium pratense HOM05D000135 ORTHO05D000203 1.8e-09 67.0 90 47.8
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 2.3e-09 66.6 110 40.9
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 2.3e-09 66.6 110 40.9
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 2.3e-09 66.6 88 44.3
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 2.3e-09 66.6 88 42.0
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 2.3e-09 66.6 113 37.2
Lalb_Chr09g0328311 Lupinus albus HOM05D000135 ORTHO05D000203 2.3e-09 66.6 90 42.2
Oeu025574.1 Olea europaea HOM05D000135 ORTHO05D000203 2.3e-09 66.6 73 46.6
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 2.3e-09 66.6 86 41.9
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 4.0e-09 65.9 118 41.5
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 4.0e-09 65.9 100 41.0
Lsat_1_v5_gn_5_112780 Lactuca sativa HOM05D000135 ORTHO05D000203 4.0e-09 65.9 101 40.6
SGA_v2.0_scaffold90G27662 Striga asiatica HOM05D000135 ORTHO05D000203 4.0e-09 65.9 101 41.6
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 4.0e-09 65.9 105 42.9
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 5.2e-09 65.5 110 40.0
CSS0044479 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 5.2e-09 65.5 75 44.0
AUR62003869 Chenopodium quinoa HOM05D000135 ORTHO05D000203 5.2e-09 65.5 69 50.7
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 8.8e-09 64.7 68 50.0
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 2.0e-08 63.5 110 40.0
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 2.0e-08 63.5 110 40.0
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 2.0e-08 63.5 110 39.1
Glyma.02G133000 Glycine max HOM05D000135 ORTHO05D000203 2.0e-08 63.5 101 38.6
AT5G42380 Arabidopsis thaliana HOM05D000135 ORTHO05D000816 3.4e-08 62.8 113 37.2
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 5.7e-08 62.0 106 38.7
Thecc.02G100300 Theobroma cacao HOM05D000135 ORTHO05D000203 5.7e-08 62.0 100 40.0
Medtr5g017550 Medicago truncatula HOM05D000135 ORTHO05D000203 7.5e-08 61.6 92 46.7
Ciclev10029994m.g Citrus clementina HOM05D000135 ORTHO05D000203 9.8e-08 61.2 116 38.8
ECA233G3872 Erigeron canadensis HOM05D000017 ORTHO05D000013 9.8e-08 61.2 106 39.6
Nn4g24354 Nelumbo nucifera HOM05D000227 ORTHO05D003168 9.8e-08 61.2 99 40.4
Nn4g24355 Nelumbo nucifera HOM05D000227 ORTHO05D003168 9.8e-08 61.2 99 40.4
Gohir.A11G191800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.3e-07 60.8 76 46.1
Rhsim05G0109200 Rhododendron simsii HOM05D000135 ORTHO05D000203 1.3e-07 60.8 65 46.2
TAR629G2506 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.3e-07 60.8 105 40.0
AL8G19120 Arabidopsis lyrata HOM05D000135 ORTHO05D000816 2.2e-07 60.1 113 35.4
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 2.2e-07 60.1 92 33.7
COL.COLO4_11402 Corchorus olitorius HOM05D000135 ORTHO05D000203 3.7e-07 59.3 57 54.4
FvH4_1g15930 Fragaria vesca HOM05D000135 ORTHO05D000203 3.7e-07 59.3 61 54.1
Gohir.D11G198300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 3.7e-07 59.3 75 45.3
Gorai.007G212400 Gossypium raimondii HOM05D000135 ORTHO05D000203 3.7e-07 59.3 75 45.3
Nn8g39497 Nelumbo nucifera HOM05D000135 ORTHO05D000203 3.7e-07 59.3 109 38.5
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 4.8e-07 58.9 76 48.7
Nn3g18356 Nelumbo nucifera HOM05D000135 ORTHO05D000203 4.8e-07 58.9 107 37.4
Hma1.2p1_0283F.1_g113440 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 6.3e-07 58.5 66 43.9
Sp1g33430 Schrenkiella parvula HOM05D000135 ORTHO05D011359 6.3e-07 58.5 58 53.4
Carub.0008s0678 Capsella rubella HOM05D000135 ORTHO05D000816 8.3e-07 58.2 113 37.2
CARHR058370 Cardamine hirsuta HOM05D000135 ORTHO05D000203 8.3e-07 58.2 77 41.6
Thhalv10019556m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 8.3e-07 58.2 72 40.3
FAN19G0794 Fragaria x ananassa HOM05D000135 ORTHO05D000203 8.3e-07 58.2 83 47.0
Cfa004516 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.4e-06 57.4 105 40.0
Nitab4.5_0024537g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.4e-06 57.4 85 43.5
Potri.007G042900 Populus trichocarpa HOM05D000135 ORTHO05D000203 1.4e-06 57.4 75 48.0
Aqoxy3G04020 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 1.8e-06 57.0 80 42.5
AL7G46640 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.8e-06 57.0 72 43.1
AT5G37770 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 1.8e-06 57.0 72 43.1
Sabra07G0038000 Salix brachista HOM05D000135 ORTHO05D000203 1.8e-06 57.0 75 46.7
BcaC08g43136 Brassica carinata HOM05D000135 ORTHO05D011359 2.4e-06 56.6 58 55.2
BcaC08g47176 Brassica carinata HOM05D000135 ORTHO05D000816 2.4e-06 56.6 64 45.3
C06p04130 Brassica napus HOM05D000135 ORTHO05D011359 2.4e-06 56.6 58 55.2
Thhalv10012139m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 2.4e-06 56.6 62 51.6
A02p20830 Brassica napus HOM05D000135 ORTHO05D000816 3.1e-06 56.2 74 39.2
Carub.0007s3293 Capsella rubella HOM05D000135 ORTHO05D000203 3.1e-06 56.2 72 41.7
CARHR215040 Cardamine hirsuta HOM05D000135 ORTHO05D000203 3.1e-06 56.2 72 41.7
HanXRQChr01g0013261 Helianthus annuus HOM05D000135 ORTHO05D000203 3.1e-06 56.2 74 39.2
Sp7g08140 Schrenkiella parvula HOM05D000135 ORTHO05D000816 3.1e-06 56.2 108 38.0
TWI53G1610 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 4.1e-06 55.8 99 38.4
BcaC04g21998 Brassica carinata HOM05D000135 ORTHO05D000816 5.4e-06 55.5 113 32.7
C09p25010 Brassica napus HOM05D000135 ORTHO05D000816 5.4e-06 55.5 113 32.7
BolC9t55394H Brassica oleracea HOM05D000135 ORTHO05D000816 5.4e-06 55.5 113 32.7
Carub.0004s1794 Capsella rubella HOM05D000135 ORTHO05D000203 5.4e-06 55.5 65 44.6
Gohir.D03G021400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 5.4e-06 55.5 80 50.0
Gorai.003G023100 Gossypium raimondii HOM05D000135 ORTHO05D000203 5.4e-06 55.5 80 50.0
BraA03t12154Z Brassica rapa HOM05D017453 ORTHO05D018582 7.0e-06 55.1 62 46.8
AUR62023178 Chenopodium quinoa HOM05D000135 ORTHO05D000203 7.0e-06 55.1 85 42.4
Solyc01g005370.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 7.0e-06 55.1 66 47.0
Sopen01g001390 Solanum pennellii HOM05D000135 ORTHO05D000203 7.0e-06 55.1 66 47.0
Ah.16g101220 Amaranthus hybridus HOM05D000135 ORTHO05D000203 9.1e-06 54.7 69 47.8
AL4G32280 Arabidopsis lyrata HOM05D000135 ORTHO05D011359 9.1e-06 54.7 64 46.9
BcaB07g31080 Brassica carinata HOM05D000135 ORTHO05D000816 9.1e-06 54.7 115 35.7
A06p03870 Brassica napus HOM05D000135 ORTHO05D011359 9.1e-06 54.7 58 53.4
BraA06t23595Z Brassica rapa HOM05D000135 ORTHO05D011359 9.1e-06 54.7 58 53.4
BraA09t37576Z Brassica rapa HOM05D000135 ORTHO05D000816 9.1e-06 54.7 98 35.7
CAN.G1067.4 Capsicum annuum HOM05D000135 ORTHO05D000203 9.1e-06 54.7 71 43.7
Duzib147G1692 Durio zibethinus HOM05D000135 ORTHO05D000203 9.1e-06 54.7 64 43.8
PSO017G3116 Papaver somniferum HOM05D000135 ORTHO05D000203 9.1e-06 54.7 67 41.8


User provided reference genes

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