Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.4e-173 612.1 315 100.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.3e-163 579.7 315 94.0
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.3e-153 546.6 312 87.8
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 6.5e-142 507.7 314 83.8
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.3e-99 366.3 317 58.0
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.9e-96 356.7 306 57.5
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 3.2e-96 355.9 266 62.4
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 4.6e-95 352.1 266 62.0
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.5e-93 347.1 269 60.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.9e-93 346.7 268 61.2
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.5e-93 346.3 266 60.2
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.8e-92 342.8 306 56.2
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 6.2e-92 341.7 294 56.8
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.4e-91 340.5 306 56.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.8e-91 340.1 294 55.4
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 3.1e-91 339.3 306 55.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 5.2e-91 338.6 299 56.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.2e-90 337.4 278 57.6
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.5e-90 337.0 313 54.0
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 4.4e-90 335.5 301 54.8
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 7.5e-90 334.7 300 55.0
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.7e-89 333.6 269 59.1
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.7e-89 332.4 277 58.1
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 6.4e-89 331.6 270 58.1
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.1e-88 330.9 304 54.9
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.1e-88 330.9 272 57.0
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.1e-88 330.9 266 58.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-88 330.1 272 57.0
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.2e-88 329.3 266 57.9
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 9.2e-88 327.8 269 58.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.2e-87 327.4 266 59.0
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.6e-87 327.0 317 50.5
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.1e-87 326.6 304 54.3
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 7.8e-87 324.7 291 52.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 7.8e-87 324.7 315 53.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 7.8e-87 324.7 323 54.5
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 6.6e-86 321.6 315 52.7
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 8.6e-86 321.2 266 55.3
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-85 320.9 303 54.8
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-85 320.9 303 54.8
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.5e-85 320.5 273 55.7
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 3.3e-85 319.3 275 56.7
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 3.3e-85 319.3 267 56.9
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.3e-85 318.9 295 52.9
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 5.6e-85 318.5 304 51.6
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.3e-85 318.2 300 52.0
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.2e-84 317.4 316 52.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.1e-84 316.6 299 53.8
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 3.6e-84 315.8 266 55.6
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 4.7e-84 315.5 266 55.6
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.7e-84 315.5 313 49.8
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.1e-83 314.3 298 52.0
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.8e-83 313.5 271 54.2
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 3.1e-83 312.8 267 54.7
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.0e-83 312.4 276 51.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 6.8e-83 311.6 292 51.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.9e-83 311.2 295 50.5
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.2e-82 310.8 274 52.9
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.2e-82 310.8 295 50.5
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.6e-82 309.7 301 51.2
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.4e-82 309.3 298 51.7
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 3.4e-82 309.3 299 52.8
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.4e-82 308.9 298 50.7
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 5.8e-82 308.5 277 54.5
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.3e-81 307.4 265 55.8
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.9e-81 305.4 309 49.2
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.4e-81 304.7 319 50.2
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 3.2e-80 302.8 310 53.9
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 4.1e-80 302.4 299 48.8
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 4.6e-79 298.9 294 47.3
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 4.6e-79 298.9 265 52.1
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 6.0e-79 298.5 299 49.2
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 7.8e-79 298.1 317 48.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.3e-78 297.4 286 52.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.7e-78 297.0 277 50.5
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.7e-78 297.0 282 51.1
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 5.6e-77 292.0 302 49.0
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 9.6e-77 291.2 321 46.1
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.2e-76 290.8 312 47.8
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.2e-76 290.8 267 51.7
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.6e-76 289.3 308 48.7
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 3.6e-76 289.3 267 51.3
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 3.6e-76 289.3 318 46.5
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 4.7e-76 288.9 311 47.6
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 8.1e-76 288.1 302 49.3
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.1e-75 287.7 305 49.2
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.1e-75 287.7 301 46.8
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.4e-75 287.3 313 46.6
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 3.1e-75 286.2 311 46.0
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.1e-75 286.2 321 45.2
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 6.9e-75 285.0 315 44.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.2e-74 284.3 268 52.6
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.5e-74 283.9 313 46.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 2.0e-74 283.5 311 45.3
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.0e-74 283.5 268 51.5
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 2.6e-74 283.1 308 45.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.7e-73 280.4 287 47.0
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.9e-73 279.6 314 45.2
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.2e-72 276.2 267 51.3
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 7.1e-72 275.0 273 51.3
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 9.3e-72 274.6 308 47.1
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 2.1e-71 273.5 263 51.0
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.7e-71 273.1 299 49.2
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.5e-71 272.7 355 41.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.8e-71 271.6 297 47.5
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.3e-70 270.8 307 45.3
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.7e-70 270.4 265 48.7
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.0e-70 269.6 271 49.1
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.5e-69 266.5 293 44.0
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.5e-69 266.5 307 46.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.1e-68 263.5 310 44.2
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 2.4e-67 260.0 199 64.8
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.5e-66 257.3 299 44.8
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 5.8e-66 255.4 314 46.8
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.2e-65 253.4 201 56.2
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 4.9e-65 252.3 208 57.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.9e-65 252.3 202 60.9
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.9e-65 252.3 202 60.9
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.5e-63 246.1 252 47.2
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.3e-62 244.2 302 43.7
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.6e-60 237.3 235 48.9
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.1e-59 233.0 257 45.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.4e-56 223.4 298 40.6
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.0e-54 216.5 262 41.2
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.6e-52 210.7 276 42.8
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.8e-52 209.9 267 41.2
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 9.0e-51 204.9 193 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.6e-50 203.4 260 41.5
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.0e-49 201.4 260 41.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-49 201.1 262 43.1
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.4e-48 197.6 171 53.8
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.9e-48 197.2 269 37.2
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 7.1e-48 195.3 178 50.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.0e-47 192.2 269 38.3
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.1e-46 189.1 261 37.9
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.7e-46 188.3 270 36.7
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.1e-29 134.8 206 36.9
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 3.3e-29 133.3 98 62.2
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.4e-21 106.3 124 42.7
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.2e-18 98.2 201 30.8
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.6e-18 97.8 98 44.9
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 7.7e-18 95.5 132 41.7
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.5e-16 91.3 88 44.3
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 5.7e-13 79.3 226 28.3
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.7e-12 77.8 241 24.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-11 74.7 102 42.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-11 74.7 102 42.2
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.5e-10 70.1 195 27.7
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 3.5e-10 70.1 64 46.9


User provided reference genes

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