Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.7e-180 634.4 323 100.0
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 5.2e-163 577.8 326 91.1
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.9e-153 545.4 323 86.4
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 3.0e-126 455.7 323 74.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.3e-102 376.3 308 63.0
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.3e-101 372.5 285 64.6
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 7.5e-101 371.3 287 64.8
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 3.5e-98 362.5 308 60.7
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.9e-88 330.1 317 55.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.0e-86 322.4 306 54.2
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.2e-86 322.0 268 60.8
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-80 304.3 271 58.7
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.0e-78 295.8 250 59.6
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 2.6e-77 293.1 298 50.7
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.9e-76 288.9 237 59.5
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 4.9e-76 288.9 268 51.9
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 8.3e-76 288.1 304 45.4
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.3e-76 288.1 268 53.7
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.8e-75 287.0 300 50.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.8e-75 287.0 268 53.0
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 4.1e-75 285.8 283 49.5
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.4e-75 285.4 311 47.6
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.7e-74 283.1 319 47.3
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.5e-74 282.7 269 51.3
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 7.8e-74 281.6 319 45.5
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.7e-73 280.4 264 51.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.3e-73 280.0 292 48.3
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 2.3e-73 280.0 318 44.3
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.9e-73 279.3 300 47.7
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 6.6e-73 278.5 267 51.3
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 8.6e-73 278.1 271 49.4
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.9e-72 276.9 266 51.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.5e-72 276.6 267 50.6
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 5.6e-72 275.4 269 48.7
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 7.3e-72 275.0 267 50.6
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 9.5e-72 274.6 316 45.6
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.2e-71 274.2 269 48.3
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.2e-71 274.2 308 46.8
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.8e-71 273.1 269 48.7
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.6e-71 272.7 267 49.1
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.6e-71 272.7 316 44.3
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.7e-71 272.3 270 50.7
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 8.0e-71 271.6 291 47.1
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.0e-71 271.6 269 48.3
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.4e-70 270.8 307 46.9
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.8e-70 270.4 311 44.1
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 2.3e-70 270.0 294 46.3
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.1e-70 269.6 271 49.1
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.1e-70 269.6 310 45.5
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 5.2e-70 268.9 264 48.9
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 5.2e-70 268.9 296 47.6
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 6.8e-70 268.5 302 46.0
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 6.8e-70 268.5 267 47.9
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.2e-69 267.7 317 45.7
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.2e-69 267.7 307 46.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.5e-69 267.3 312 46.5
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.0e-69 266.9 268 48.5
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.6e-69 266.5 306 47.4
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.6e-69 266.5 293 47.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.4e-69 266.2 315 46.7
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.4e-69 266.2 305 46.9
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.4e-69 266.2 305 46.9
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 4.4e-69 265.8 277 48.7
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 5.8e-69 265.4 268 47.8
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 5.8e-69 265.4 298 43.6
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 5.8e-69 265.4 267 49.1
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 9.8e-69 264.6 315 42.5
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.7e-68 263.8 266 47.7
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.9e-68 263.1 268 47.0
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.9e-68 263.1 269 48.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 3.7e-68 262.7 319 42.9
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 6.4e-68 261.9 266 48.1
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 8.3e-68 261.5 264 47.0
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.1e-67 261.2 301 43.5
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-67 260.4 267 46.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.9e-67 260.4 264 48.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.2e-67 259.6 267 47.9
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 5.4e-67 258.8 269 46.8
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 7.0e-67 258.5 321 42.4
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 9.2e-67 258.1 266 45.5
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.7e-66 256.5 267 47.2
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 3.5e-66 256.1 267 46.4
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 7.8e-66 255.0 267 46.8
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.0e-65 254.6 263 47.1
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.0e-65 254.6 284 45.1
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.0e-65 254.6 304 44.1
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.3e-65 254.2 275 44.7
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.3e-65 253.4 266 44.0
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.3e-65 253.4 266 46.2
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.0e-65 252.3 307 43.6
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 6.6e-65 251.9 267 45.7
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.1e-64 251.1 298 42.3
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.5e-64 250.8 266 45.9
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 4.3e-64 249.2 283 44.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 5.6e-64 248.8 324 41.0
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 5.6e-64 248.8 323 40.9
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 9.5e-64 248.1 324 43.5
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.6e-63 247.3 317 42.0
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.6e-63 247.3 290 42.4
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.1e-63 246.9 324 42.9
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.2e-63 245.4 317 42.6
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 8.1e-63 245.0 264 48.1
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.3e-62 243.4 268 46.3
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.2e-61 241.1 322 41.3
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.4e-61 239.6 326 41.1
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 9.9e-61 238.0 321 40.2
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.3e-60 237.7 315 41.9
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.9e-60 236.5 327 40.4
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 3.7e-60 236.1 277 45.5
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.9e-60 235.7 328 40.2
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 6.4e-60 235.3 277 41.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.6e-58 230.7 351 38.2
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.0e-57 228.0 321 39.9
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.3e-57 226.9 318 40.3
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.5e-56 223.4 236 46.6
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 3.3e-56 223.0 298 42.3
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 3.1e-54 216.5 324 37.3
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.3e-52 211.1 210 50.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.6e-49 198.7 258 39.9
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 6.6e-49 198.7 240 41.7
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.5e-48 196.8 262 37.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.2e-45 188.0 199 50.3
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.0e-45 187.2 202 44.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-44 184.5 203 46.3
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-44 184.5 203 46.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.9e-44 182.6 261 37.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 3.2e-43 179.9 168 51.2
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.2e-43 179.5 263 36.5
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.0e-41 174.9 261 36.4
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.9e-41 172.9 270 34.8
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.5e-40 170.2 260 33.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-39 167.9 278 34.2
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 3.6e-39 166.4 260 33.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.9e-38 162.2 267 33.3
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.2e-36 157.1 170 43.5
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 3.9e-33 146.4 179 43.6
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.5e-27 125.9 206 36.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 4.2e-19 99.8 97 52.6
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.1e-18 97.4 121 44.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 4.3e-16 89.7 263 25.1
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.6e-15 87.8 103 47.6
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.6e-15 87.8 103 47.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 6.3e-15 85.9 262 24.4
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 9.0e-14 82.0 313 23.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 7.7e-13 79.0 132 34.8
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.6e-10 69.7 94 35.1
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 6.1e-10 69.3 65 49.2
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 8.8e-09 65.5 90 37.8
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 8.2e-07 58.9 99 32.3


User provided reference genes

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