Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 8.1e-228 793.9 448 100.0
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 2.7e-207 725.7 449 93.3
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 1.1e-195 687.2 443 89.8
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 9.4e-184 647.5 452 79.4
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 3.6e-183 645.6 486 75.7
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 1.1e-181 640.6 451 79.4
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 9.7e-181 637.5 450 80.7
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 2.2e-180 636.3 454 81.3
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.2e-180 636.3 452 78.3
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 2.8e-180 636.0 453 80.1
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 6.3e-180 634.8 452 77.9
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 1.8e-179 633.3 450 78.2
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 3.1e-179 632.5 450 78.2
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 1.2e-178 630.6 454 80.4
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.6e-178 629.4 450 77.8
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 3.8e-177 625.5 464 76.7
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 6.1e-175 618.2 453 77.5
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 5.2e-174 615.1 451 77.2
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 5.2e-174 615.1 451 77.2
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 8.8e-174 614.4 451 76.5
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 1.5e-173 613.6 453 77.0
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 2.6e-173 612.8 452 77.2
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 1.7e-172 610.1 452 77.0
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 2.2e-172 609.8 450 76.7
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 8.2e-172 607.8 450 78.9
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.1e-171 607.4 453 75.5
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 1.8e-171 606.7 456 74.6
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 1.0e-169 600.9 487 72.9
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 1.0e-169 600.9 451 76.9
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 2.9e-169 599.4 452 77.7
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.0e-169 598.6 452 75.9
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 1.1e-168 597.4 449 78.0
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 1.6e-167 593.6 450 77.8
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.1e-167 593.2 449 75.3
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 2.7e-167 592.8 479 74.1
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.6e-167 592.4 452 76.1
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 4.7e-167 592.0 451 74.7
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 8.0e-167 591.3 503 68.6
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.4e-166 590.5 465 74.6
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.0e-166 589.3 465 74.2
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 1.2e-165 587.4 451 71.8
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.0e-165 586.6 453 76.2
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 7.5e-165 584.7 475 69.9
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 1.3e-164 583.9 451 71.6
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 1.7e-164 583.6 452 73.5
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 2.2e-164 583.2 455 76.5
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 2.2e-164 583.2 455 77.1
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 3.7e-164 582.4 453 76.2
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 9.1e-163 577.8 449 74.8
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 2.7e-162 576.2 450 74.0
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 3.5e-162 575.9 476 71.2
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 1.0e-161 574.3 450 74.0
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 1.3e-161 573.9 465 75.3
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 1.7e-161 573.5 450 72.9
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 1.7e-161 573.5 450 72.9
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 5.0e-161 572.0 464 70.5
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 8.5e-161 571.2 449 72.6
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.1e-160 570.9 452 75.0
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 3.2e-160 569.3 448 73.0
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 3.2e-160 569.3 454 73.8
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 4.2e-160 568.9 453 74.4
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 1.6e-159 567.0 455 74.1
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 6.1e-159 565.1 451 72.1
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 6.1e-159 565.1 452 71.7
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 8.0e-159 564.7 450 70.9
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 1.8e-158 563.5 449 74.6
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 1.2e-157 560.8 450 73.8
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.2e-157 560.8 449 73.7
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 4.4e-157 558.9 448 71.4
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 1.4e-155 553.9 461 69.0
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 1.1e-152 544.3 452 69.9
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 2.5e-152 543.1 451 71.8
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 4.4e-149 532.3 477 65.6
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 1.7e-148 530.4 376 78.7
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 2.2e-148 530.0 450 70.7
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 8.3e-148 528.1 453 69.3
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 1.1e-147 527.7 447 68.5
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 9.5e-144 514.6 460 65.0
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 2.8e-143 513.1 451 68.1
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.8e-143 513.1 377 76.1
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.0e-142 511.1 451 66.1
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 4.4e-141 505.8 307 98.4
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 5.8e-141 505.4 375 75.2
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.9e-139 500.4 377 76.9
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.0e-138 496.9 389 74.6
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 1.4e-134 484.2 458 63.5
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 4.1e-131 472.6 475 61.1
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 7.3e-128 461.8 453 62.7
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.1e-127 460.3 392 71.2
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 1.5e-125 454.1 452 57.7
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 5.1e-121 439.1 490 59.8
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 1.4e-118 431.0 383 71.0
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 1.7e-108 397.5 378 67.7
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 3.8e-108 396.4 311 77.5
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 2.4e-107 393.7 452 59.7
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 5.1e-105 386.0 470 53.2
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 8.1e-103 378.6 309 73.1
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 2.0e-101 374.0 323 70.0
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.4e-99 367.1 455 49.2
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 2.8e-95 353.6 310 71.0
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.8e-95 353.6 315 71.7
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.8e-95 353.6 480 52.1
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 4.8e-87 326.2 238 76.5
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 9.0e-86 322.0 462 50.0
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 1.4e-83 314.7 342 62.6
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 4.8e-71 273.1 327 58.1
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 2.6e-69 267.3 243 66.3
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 5.9e-69 266.2 201 77.1
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 2.9e-68 263.8 201 77.1
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.7e-66 256.5 305 57.4
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.5e-64 251.5 286 60.5
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 3.5e-61 240.4 154 76.0
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.0e-60 238.8 128 91.4
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 1.3e-60 238.4 128 90.6
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 1.7e-60 238.0 249 57.4
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 1.4e-57 228.4 238 60.1
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 5.3e-54 216.5 128 85.9
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.5e-51 206.5 354 46.3
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 1.8e-46 191.4 422 42.7
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.1e-38 165.6 84 91.7
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 7.0e-38 162.9 474 32.9
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 8.9e-33 146.0 164 57.3
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 3.9e-28 130.6 147 55.8
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 3.6e-26 124.0 285 34.7
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 7.5e-24 116.3 72 80.6
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.4e-22 111.3 66 84.8
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.0e-21 108.2 78 74.4
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.5e-19 102.1 64 84.4
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 2.8e-18 97.8 77 70.1
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 4.7e-18 97.1 384 29.4
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 1.4e-17 95.5 81 63.0
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 1.8e-17 95.1 89 61.8
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 1.8e-17 95.1 90 63.3
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.4e-16 90.5 76 69.7
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 2.3e-12 78.2 50 76.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 6.2e-10 70.1 295 30.8
Actinidia12052 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.2e-06 57.8 49 63.3


User provided reference genes

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