Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 4.7e-121 438.0 236 100.0
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 6.6e-115 417.5 242 95.0
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 4.8e-113 411.4 233 95.3
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 3.1e-104 382.1 234 87.2
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 3.3e-90 335.5 219 83.6
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 8.2e-89 330.9 219 81.3
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 5.8e-87 324.7 214 82.2
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 3.2e-85 318.9 228 77.6
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.2e-85 318.9 224 79.5
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 2.7e-84 315.8 227 76.2
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 3.5e-84 315.5 224 78.6
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 7.9e-84 314.3 214 80.8
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 1.0e-83 313.9 224 76.3
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 1.8e-83 313.2 214 79.9
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 1.8e-83 313.2 210 81.4
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.0e-83 312.4 224 78.1
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 3.0e-83 312.4 214 79.9
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.9e-83 312.0 214 79.4
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 6.7e-83 311.2 214 74.8
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 6.7e-83 311.2 214 74.8
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 6.7e-83 311.2 225 69.8
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.1e-82 310.5 211 71.6
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.1e-82 310.5 214 79.4
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.1e-82 310.5 214 79.4
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.5e-82 310.1 214 79.4
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 1.5e-82 310.1 214 80.4
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 1.5e-82 310.1 212 80.2
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 5.7e-82 308.1 212 79.7
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 5.7e-82 308.1 209 71.3
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 5.7e-82 308.1 214 78.0
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 7.4e-82 307.8 214 79.0
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 1.3e-81 307.0 213 77.9
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 2.8e-81 305.8 215 77.2
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 4.8e-81 305.1 214 72.0
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 6.3e-81 304.7 215 79.5
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 6.3e-81 304.7 225 75.1
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 1.1e-80 303.9 215 80.0
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 2.4e-80 302.8 213 77.9
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 4.1e-80 302.0 211 78.2
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 6.9e-80 301.2 215 68.8
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.2e-79 300.4 212 79.2
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.5e-79 300.1 225 71.1
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 3.4e-79 298.9 210 69.0
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 1.7e-78 296.6 214 68.2
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 6.5e-78 294.7 212 71.2
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 1.9e-77 293.1 217 66.4
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 1.9e-77 293.1 212 74.1
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 2.5e-77 292.7 208 78.4
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 7.2e-77 291.2 217 65.9
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 9.4e-77 290.8 227 69.6
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 1.6e-76 290.0 266 57.1
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 2.1e-76 289.7 212 74.1
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 2.1e-76 289.7 212 74.1
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 2.1e-76 289.7 214 65.4
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 2.1e-76 289.7 212 73.6
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 2.1e-76 289.7 210 69.0
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 6.1e-76 288.1 209 74.2
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 1.0e-75 287.3 213 72.3
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 1.4e-75 287.0 212 72.6
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 1.8e-75 286.6 209 73.2
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 2.3e-75 286.2 225 63.1
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 2.3e-75 286.2 210 74.3
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 2.3e-75 286.2 210 68.6
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 3.0e-75 285.8 207 73.4
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 3.0e-75 285.8 213 65.3
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 3.0e-75 285.8 209 72.7
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 3.0e-75 285.8 209 72.7
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 1.5e-74 283.5 168 79.8
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 1.5e-74 283.5 212 72.6
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 2.5e-74 282.7 215 70.2
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 2.5e-74 282.7 215 71.2
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 5.7e-74 281.6 214 62.6
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 7.4e-74 281.2 215 70.2
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 9.7e-74 280.8 215 70.2
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 9.7e-74 280.8 212 72.6
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 9.7e-74 280.8 212 73.1
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 1.3e-73 280.4 173 76.3
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 1.3e-73 280.4 210 73.3
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 1.7e-73 280.0 215 69.8
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 3.7e-73 278.9 212 70.3
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 3.7e-73 278.9 212 70.3
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 3.7e-73 278.9 216 63.9
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 6.3e-73 278.1 215 69.8
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 6.3e-73 278.1 215 69.3
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 6.3e-73 278.1 215 69.8
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 8.2e-73 277.7 209 63.6
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 1.1e-72 277.3 216 69.9
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 1.1e-72 277.3 212 71.7
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 1.4e-72 276.9 205 73.7
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 2.4e-72 276.2 212 69.8
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 3.1e-72 275.8 209 73.2
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 3.1e-72 275.8 215 69.3
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 3.1e-72 275.8 222 61.7
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 6.9e-72 274.6 207 73.4
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 9.1e-72 274.2 214 71.5
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 9.1e-72 274.2 210 71.4
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 2.6e-71 272.7 209 72.7
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 2.6e-71 272.7 216 69.0
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 1.3e-70 270.4 215 68.4
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 1.7e-70 270.0 212 69.3
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 5.5e-69 265.0 212 60.4
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 9.4e-69 264.2 189 76.7
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 1.6e-68 263.5 210 70.5
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 3.3e-66 255.8 212 65.6
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 1.7e-65 253.4 210 58.1
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 1.3e-62 243.8 215 59.1
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 2.2e-62 243.0 204 63.7
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 1.1e-61 240.7 209 56.5
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.5e-61 240.4 203 62.1
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 3.0e-51 206.1 212 59.9
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 4.8e-49 198.7 203 55.2
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 7.7e-47 191.4 168 56.5
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 1.6e-44 183.7 230 54.8
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 3.6e-44 182.6 205 43.4
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 4.9e-41 172.2 168 50.6
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 7.0e-40 168.3 139 57.6
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 6.8e-35 151.8 201 47.8
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.7e-33 147.1 96 74.0
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.5e-29 134.0 90 73.3
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 1.8e-19 100.5 93 68.8
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 8.1e-12 75.1 49 67.3
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 2.9e-09 66.6 93 41.9
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 3.7e-09 66.2 84 34.5
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 2.7e-07 60.1 54 55.6
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 4.6e-07 59.3 151 29.8
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 1.3e-06 57.8 154 31.2
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.3e-06 57.8 154 31.2
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-06 57.0 86 39.5
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.9e-06 56.2 85 38.8
unitig_899.g15441 Utricularia gibba HOM05D001818 ORTHO05D001780 3.9e-06 56.2 89 40.4
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 5.1e-06 55.8 105 30.5
Medtr5g016930 Medicago truncatula HOM05D006615 ORTHO05D007999 6.6e-06 55.5 53 50.9


User provided reference genes

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