Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.7e-51 204.5 99 100.0
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 8.3e-43 176.8 105 84.8
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 2.7e-25 118.6 98 65.3
Sed0015961 Sechium edule HOM05D005432 ORTHO05D004599 1.7e-16 89.4 89 58.4
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 7.5e-12 73.9 56 62.5
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 1.3e-11 73.2 81 50.6
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.7e-11 72.8 56 60.7
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 1.9e-10 69.3 87 47.1
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 2.4e-10 68.9 74 50.0
Sed0017136 Sechium edule HOM05D005432 ORTHO05D004599 3.2e-10 68.6 107 43.0
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 9.2e-10 67.0 84 47.6
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.2e-09 66.6 66 53.0
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.6e-09 66.2 55 60.0
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.6e-09 66.2 67 53.7
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 2.1e-09 65.9 49 61.2
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.7e-09 65.5 84 46.4
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.7e-09 65.5 84 46.4
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 6.0e-09 64.3 82 43.9
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 7.8e-09 63.9 84 45.2
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 7.8e-09 63.9 58 58.6
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 7.8e-09 63.9 67 53.7
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 1.0e-08 63.5 46 58.7
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 1.0e-08 63.5 93 39.8
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.0e-08 63.5 78 47.4
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 1.3e-08 63.2 59 52.5
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 1.7e-08 62.8 91 38.5
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.7e-08 62.8 75 50.7
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.7e-08 62.8 75 50.7
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.7e-08 62.8 75 50.7
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 2.3e-08 62.4 38 73.7
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.0e-08 62.0 70 48.6
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.0e-08 62.0 70 48.6
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 3.0e-08 62.0 70 48.6
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 3.9e-08 61.6 58 56.9
arahy.Tifrunner.gnm1.ann1.0M6NCC Arachis hypogaea HOM05D005432 ORTHO05D004599 6.6e-08 60.8 57 52.6
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 6.6e-08 60.8 64 56.2
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 6.6e-08 60.8 72 50.0
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 6.6e-08 60.8 72 51.4
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 6.6e-08 60.8 58 58.6
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 8.6e-08 60.5 61 54.1
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 8.6e-08 60.5 61 54.1
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.1e-07 60.1 44 63.6
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.1e-07 60.1 63 52.4
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-07 60.1 61 52.5
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-07 60.1 61 52.5
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 1.1e-07 60.1 46 58.7
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 1.5e-07 59.7 49 63.3
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 1.5e-07 59.7 68 45.6
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.9e-07 59.3 81 48.1
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 1.9e-07 59.3 41 65.9
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 2.5e-07 58.9 52 59.6
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 2.5e-07 58.9 41 63.4
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 2.5e-07 58.9 52 55.8
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 5.6e-07 57.8 58 53.4
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.6e-07 57.8 91 36.3
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 7.3e-07 57.4 58 53.4
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 9.5e-07 57.0 67 47.8
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 9.5e-07 57.0 53 52.8
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 1.2e-06 56.6 61 47.5
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 1.2e-06 56.6 52 51.9
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 1.2e-06 56.6 70 55.7
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 1.6e-06 56.2 64 46.9
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 1.6e-06 56.2 72 43.1
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.6e-06 56.2 36 63.9
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.6e-06 56.2 61 52.5
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.6e-06 56.2 66 47.0
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.6e-06 56.2 50 56.0
Sed0011662 Sechium edule HOM05D005432 ORTHO05D004599 1.6e-06 56.2 73 47.9
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 1.6e-06 56.2 81 48.1
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 2.1e-06 55.8 58 56.9
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 2.1e-06 55.8 55 56.4
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.1e-06 55.8 42 52.4
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.1e-06 55.8 44 52.3
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 2.8e-06 55.5 61 50.8
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 2.8e-06 55.5 90 40.0
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 3.6e-06 55.1 53 56.6
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 3.6e-06 55.1 52 50.0
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 3.6e-06 55.1 46 60.9
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 4.7e-06 54.7 53 56.6
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 4.7e-06 54.7 63 49.2
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 4.7e-06 54.7 53 47.2
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 6.2e-06 54.3 92 35.9
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 8.1e-06 53.9 54 50.0
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 8.1e-06 53.9 62 54.8
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 8.1e-06 53.9 36 63.9


User provided reference genes

Program Settings