Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 0.0e+00 1096.3 534 100.0
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 5.6e-287 990.3 534 90.1
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 3.8e-275 951.0 546 87.4
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 2.5e-247 858.6 534 80.0
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 1.8e-221 772.7 519 70.9
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 1.4e-213 746.5 528 68.2
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 4.5e-212 741.5 493 70.0
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 6.5e-211 737.6 555 65.6
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 5.5e-210 734.6 533 64.9
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 3.6e-209 731.9 512 66.4
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 1.8e-208 729.6 492 70.3
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 2.0e-207 726.1 503 66.0
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 1.7e-206 723.0 527 67.9
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 2.8e-206 722.2 509 67.8
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 8.3e-206 720.7 495 69.5
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 2.0e-204 716.1 522 65.5
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 2.3e-203 712.6 517 66.7
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 5.0e-203 711.4 502 66.9
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 4.3e-202 708.4 481 68.2
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 6.8e-200 701.0 519 64.5
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 6.8e-200 701.0 481 67.8
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 4.4e-199 698.4 510 63.5
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 1.7e-198 696.4 574 59.6
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 1.8e-197 693.0 522 61.3
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 6.0e-196 688.0 487 64.1
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 1.3e-195 686.8 524 62.8
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 1.5e-194 683.3 516 63.2
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.9e-194 682.9 586 58.9
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 4.7e-193 678.3 492 66.9
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 5.2e-192 674.9 495 65.1
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 2.2e-190 669.5 482 65.6
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 2.4e-189 666.0 511 62.2
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 2.7e-188 662.5 490 64.7
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 3.5e-188 662.1 484 65.1
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 7.8e-188 661.0 499 61.5
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 2.3e-187 659.4 451 68.1
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 3.0e-187 659.1 500 63.4
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 2.3e-184 649.4 423 69.5
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 3.1e-184 649.0 549 60.3
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 2.0e-183 646.4 497 61.6
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 4.4e-183 645.2 503 58.8
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 1.9e-181 639.8 435 67.8
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 4.1e-181 638.6 494 60.7
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 7.1e-181 637.9 489 60.9
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.0e-179 634.0 510 63.3
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 6.6e-179 631.3 500 57.6
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 3.6e-177 625.5 490 62.4
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 9.9e-175 617.5 508 58.9
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 3.2e-173 612.5 490 57.1
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 1.3e-171 607.1 537 54.0
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 2.5e-170 602.8 527 59.6
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 2.8e-169 599.4 508 53.9
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 1.3e-166 590.5 407 67.6
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 3.6e-161 572.4 443 60.3
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 9.0e-160 567.8 425 62.8
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 4.3e-154 548.9 492 51.8
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 3.0e-147 526.2 393 61.1
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 2.4e-144 516.5 523 49.5
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 4.8e-121 439.1 425 52.5
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 5.3e-120 435.6 512 44.3
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 4.1e-112 409.5 274 70.8
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 5.9e-111 405.6 445 46.5
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 2.7e-108 396.7 515 42.7
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 5.0e-94 349.4 552 38.6
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 7.5e-90 335.5 274 54.0
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 1.8e-83 314.3 274 58.0
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 1.3e-81 308.1 302 49.7
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 1.1e-77 295.0 210 66.7
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 9.5e-77 292.0 187 72.2
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 3.6e-76 290.0 525 38.3
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 9.2e-72 275.4 362 42.3
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 1.2e-71 275.0 220 59.1
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 1.6e-68 264.6 491 33.6
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 2.2e-65 254.2 515 32.8
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 2.3e-54 217.6 525 32.0
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.9e-48 198.0 199 46.2
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 5.4e-48 196.4 124 73.4
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 3.1e-43 180.6 246 38.2
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 4.3e-37 160.2 186 45.7
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.3e-28 132.1 85 69.4
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 1.4e-24 118.6 89 62.9
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 6.1e-23 113.2 74 73.0
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 5.1e-22 110.2 88 58.0
PRCOL_00001572 Prasinoderma coloniale HOM05D002360 ORTHO05D006971 5.7e-21 106.7 491 21.4
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 7.4e-21 106.3 492 22.6
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 3.1e-19 100.9 177 33.9
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 1.0e-17 95.9 477 21.8
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 2.9e-17 94.4 497 21.7
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 6.5e-17 93.2 504 22.0
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 8.5e-17 92.8 479 22.1
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 1.1e-16 92.4 504 21.8
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 1.1e-16 92.4 473 21.4
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 2.5e-16 91.3 502 21.7
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 2.5e-16 91.3 77 50.6
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 3.2e-16 90.9 470 21.9
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 5.5e-16 90.1 472 22.0
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 5.5e-16 90.1 507 21.7
Pp3c21_12310 Physcomitrium patens HOM05D002360 ORTHO05D006971 1.2e-15 89.0 504 21.2
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 1.6e-15 88.6 475 22.1
Manes.05G193700 Manihot esculenta HOM05D002360 ORTHO05D006971 1.6e-15 88.6 508 21.3
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 2.1e-15 88.2 479 21.5
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 2.1e-15 88.2 507 21.3
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 2.7e-15 87.8 475 21.7
Sed0014208 Sechium edule HOM05D002360 ORTHO05D006971 2.7e-15 87.8 514 21.4
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 2.7e-15 87.8 474 21.5
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 3.6e-15 87.4 502 20.7
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 4.6e-15 87.0 508 21.5
Sabra02G0179300 Salix brachista HOM05D002360 ORTHO05D006971 4.6e-15 87.0 479 21.5
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 4.6e-15 87.0 84 48.8
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 6.1e-15 86.7 499 21.0
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 6.1e-15 86.7 500 20.8
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 6.1e-15 86.7 479 21.5
RcHm_v2.0_Chr4g0411571 Rosa chinensis HOM05D002360 ORTHO05D006971 6.1e-15 86.7 479 21.5
AagrBONN_evm.TU.Sc2ySwM_368.2776 Anthoceros agrestis HOM05D002360 ORTHO05D006971 1.0e-14 85.9 490 21.2
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 1.0e-14 85.9 476 21.4
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 1.0e-14 85.9 476 21.4
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 1.0e-14 85.9 473 21.1
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 1.0e-14 85.9 479 21.3
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 1.4e-14 85.5 498 22.3
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 1.4e-14 85.5 493 21.7
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 1.4e-14 85.5 493 21.7
ECA232G4402 Erigeron canadensis HOM05D002360 ORTHO05D006971 1.8e-14 85.1 475 21.7
THA.LOC104822231 Tarenaya hassleriana HOM05D002360 ORTHO05D006971 1.8e-14 85.1 478 20.9
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 2.3e-14 84.7 499 20.8
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 2.3e-14 84.7 499 20.6
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 2.3e-14 84.7 499 20.6
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 2.3e-14 84.7 499 20.6
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 2.3e-14 84.7 479 21.3
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 3.9e-14 84.0 502 20.5
C04p41610 Brassica napus HOM05D002360 ORTHO05D006971 5.1e-14 83.6 497 20.3
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 5.1e-14 83.6 472 21.4
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 6.7e-14 83.2 507 20.9
Gorai.011G149900 Gossypium raimondii HOM05D002360 ORTHO05D006971 8.8e-14 82.8 507 20.7
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 1.1e-13 82.4 470 20.6
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 1.5e-13 82.0 507 20.7
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 1.5e-13 82.0 475 20.8
A04p07910 Brassica napus HOM05D002360 ORTHO05D006971 2.0e-13 81.6 499 20.4
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 2.0e-13 81.6 469 20.9
TWI63G1808 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 2.0e-13 81.6 470 21.1
BraA04t16480Z Brassica rapa HOM05D002360 ORTHO05D006971 2.5e-13 81.3 499 20.2
Potri.002G235200 Populus trichocarpa HOM05D002360 ORTHO05D006971 2.5e-13 81.3 430 22.3
BcaB02g08628 Brassica carinata HOM05D002360 ORTHO05D006971 3.3e-13 80.9 499 20.2
CBR_g37129 Chara braunii HOM05D002360 ORTHO05D006297 3.3e-13 80.9 485 22.1
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 3.3e-13 80.9 442 21.3
MCO04G494 Micromonas commoda HOM05D002360 ORTHO05D006971 4.3e-13 80.5 508 23.2
Actinidia25995 Actinidia chinensis HOM05D002360 ORTHO05D006971 7.4e-13 79.7 477 21.0
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 7.4e-13 79.7 487 22.0
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 9.7e-13 79.3 69 56.5
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 9.7e-13 79.3 480 20.4
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 1.7e-12 78.6 470 20.4
A08p24280 Brassica napus HOM05D002360 ORTHO05D006971 1.7e-12 78.6 470 20.2
C03p76930 Brassica napus HOM05D002360 ORTHO05D006971 2.2e-12 78.2 470 20.2
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 3.7e-12 77.4 479 20.9
TWI38G1596 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 8.2e-12 76.3 477 20.3
Mapoly0108s0060 Marchantia polymorpha HOM05D002360 ORTHO05D006971 1.4e-11 75.5 474 21.1
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 4.1e-11 73.9 470 21.1
SEGI_13435 Sequoiadendron giganteum HOM05D002360 ORTHO05D006297 5.3e-11 73.6 480 21.5
Lsat_1_v5_gn_4_89381 Lactuca sativa HOM05D002360 ORTHO05D006971 9.1e-11 72.8 501 20.2
SMO141G0153 Selaginella moellendorffii HOM05D002360 ORTHO05D006971 5.9e-10 70.1 401 21.7
CDE06G2307 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 7.7e-10 69.7 471 20.0
Migut.O00487 Erythranthe guttata HOM05D002360 ORTHO05D006297 2.9e-09 67.8 458 18.6
CDE07G0903 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 5.0e-09 67.0 441 20.6
Medtr3g084830 Medicago truncatula HOM05D002360 ORTHO05D006971 1.4e-08 65.5 284 21.5
Cfa008674 Carpinus fangiana HOM05D002360 ORTHO05D006971 6.1e-07 60.1 326 20.9
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 1.0e-06 59.3 91 38.5


User provided reference genes

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