Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 0.0e+00 1666.0 1103 100.0
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 0.0e+00 1468.8 1092 91.8
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 0.0e+00 1464.1 1107 91.8
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 0.0e+00 1272.7 1104 83.6
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 0.0e+00 1183.3 1066 77.7
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 9.3e-220 768.1 1119 62.4
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 4.6e-211 739.2 1144 55.9
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.5e-209 734.2 1120 61.2
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 5.7e-209 732.3 1169 59.5
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.4e-204 717.6 1139 56.9
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-195 688.0 1091 58.9
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 4.1e-191 672.9 1074 60.2
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 2.5e-188 663.7 1127 54.2
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 3.0e-186 656.8 1134 53.9
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 7.7e-182 642.1 1136 48.6
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 4.0e-178 629.8 1123 57.0
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 8.8e-178 628.6 1083 58.0
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.2e-177 628.2 1127 57.1
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.1e-175 621.7 1125 53.2
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 5.9e-174 615.9 1109 57.0
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 6.6e-173 612.5 1100 56.0
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 4.3e-172 609.8 1111 57.3
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.8e-170 602.4 1109 56.5
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 2.0e-169 600.9 1119 55.6
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 3.4e-169 600.1 1115 52.6
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 9.8e-169 598.6 1113 56.4
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.7e-168 597.8 1195 49.1
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 4.1e-167 593.2 1134 56.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 7.8e-166 589.0 1114 54.4
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.7e-165 587.8 1056 58.5
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 4.7e-163 579.7 1113 52.1
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 8.9e-162 575.5 1160 54.2
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.4e-161 573.5 1138 54.5
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 8.3e-160 568.9 1115 48.5
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 7.8e-158 562.4 1195 49.2
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 5.0e-157 559.7 1169 52.4
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 8.6e-157 558.9 1170 52.4
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.3e-152 545.0 1127 54.3
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 5.4e-151 539.7 1118 54.1
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 1.1e-148 531.9 1144 55.0
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.9e-148 531.2 1122 53.6
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 7.3e-148 529.3 1114 52.7
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 1.2e-147 528.5 1137 52.5
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 4.7e-147 526.6 1117 53.3
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 6.2e-147 526.2 1118 53.3
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.2e-145 521.9 1117 53.2
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 9.9e-145 518.8 1124 53.6
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 2.2e-144 517.7 1118 52.6
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.1e-143 515.4 1134 51.9
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.4e-143 515.0 1119 52.8
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 7.1e-143 512.7 1120 52.9
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.1e-142 511.1 1142 50.9
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 7.8e-142 509.2 1092 53.8
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.0e-141 507.3 1109 53.8
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 2.8e-139 500.7 1093 52.6
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 4.7e-139 500.0 1122 53.1
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 3.1e-138 497.3 1104 52.3
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 5.2e-138 496.5 830 58.8
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.0e-137 494.6 1178 51.3
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 2.6e-137 494.2 1171 51.1
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.7e-136 491.5 961 57.9
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 1.7e-136 491.5 1139 51.6
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.7e-136 491.5 1109 52.4
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 1.9e-135 488.0 1097 52.1
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 9.3e-135 485.7 1118 48.6
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 7.8e-134 482.6 1087 52.9
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 2.3e-133 481.1 1106 52.7
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.5e-132 478.4 1098 52.2
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.9e-132 478.0 1002 53.0
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 9.6e-132 475.7 1135 52.1
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.3e-131 475.3 1120 50.7
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 1.4e-130 471.9 1095 51.7
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 2.4e-130 471.1 1036 50.0
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 3.1e-130 470.7 958 47.5
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 4.5e-129 466.8 712 68.1
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 4.9e-128 463.4 1111 51.8
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 6.7e-125 453.0 1122 52.1
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 4.3e-124 450.3 606 71.9
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.0e-121 441.4 1172 48.8
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 3.5e-118 430.6 1218 47.7
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 7.9e-118 429.5 1133 50.7
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 6.2e-115 419.9 884 55.7
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.8e-114 418.3 1122 49.6
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.8e-114 418.3 697 62.1
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 3.1e-114 417.5 1137 49.0
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 5.8e-113 413.3 1111 49.5
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 3.2e-111 407.5 1139 48.7
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 4.2e-111 407.1 1105 49.0
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.3e-111 406.0 742 63.6
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 5.1e-109 400.2 1154 48.1
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 5.3e-106 390.2 1149 47.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 2.2e-104 384.8 1145 47.1
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.8e-104 384.0 740 52.6
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 1.7e-99 368.6 829 57.5
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.9e-96 357.8 1029 50.5
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 2.9e-96 357.8 761 52.2
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 8.8e-69 266.5 250 53.6
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 2.6e-52 211.8 165 64.2
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.7e-51 209.1 280 81.1
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 3.5e-49 201.4 235 47.2
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 4.6e-49 201.1 711 44.7
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 9.5e-47 193.4 758 42.1
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 2.8e-46 191.8 655 45.3
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 2.3e-45 188.7 687 55.2
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.0e-45 188.0 320 68.8
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 8.3e-43 180.3 271 41.7
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.9e-42 179.1 278 40.6
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.4e-42 178.7 123 69.9
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 3.2e-42 178.3 343 60.1
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 6.6e-40 170.6 705 43.0
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.2e-36 159.8 272 36.0
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.4e-34 152.1 128 65.6
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 2.4e-34 152.1 702 51.7
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 5.1e-32 144.4 119 61.3
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 4.3e-31 141.4 745 39.5
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.8e-29 136.0 287 32.8
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.8e-27 128.3 107 59.8
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.8e-27 128.3 649 47.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.6e-25 121.3 155 41.9
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 3.3e-23 115.2 109 55.0
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 6.9e-21 107.5 94 50.0
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.4e-19 100.5 99 76.8
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 4.2e-18 98.2 143 46.2
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 1.3e-16 93.2 244 29.5
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.2e-11 75.9 78 50.0
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 2.1e-06 59.3 38 71.1
SEGI_25615 Sequoiadendron giganteum HOM05D006258 ORTHO05D007961 6.2e-06 57.8 81 35.8
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 8.1e-06 57.4 369 27.6


User provided reference genes

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