Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 3.2e-281 971.1 479 100.0
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 3.5e-224 781.6 491 81.7
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 6.9e-220 767.3 387 97.9
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 7.9e-208 727.2 431 81.7
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 8.8e-207 723.8 430 81.4
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 5.7e-206 721.1 454 78.0
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 8.2e-205 717.2 385 90.1
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 2.0e-203 712.6 448 77.9
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 2.0e-203 712.6 440 78.9
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 3.5e-203 711.8 446 78.0
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 4.5e-203 711.4 448 78.1
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 5.9e-203 711.1 422 81.8
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 6.5e-202 707.6 425 79.3
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 1.1e-201 706.8 450 77.1
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 2.5e-201 705.7 428 80.6
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 3.2e-201 705.3 442 78.1
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 3.2e-201 705.3 420 80.7
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 9.4e-201 703.7 469 73.3
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 2.7e-200 702.2 448 76.1
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 3.6e-200 701.8 444 77.7
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 8.0e-200 700.7 443 76.7
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 1.8e-199 699.5 449 76.6
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 2.3e-199 699.1 423 79.7
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 3.0e-199 698.7 447 76.5
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 5.2e-199 698.0 425 79.3
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 7.4e-198 694.1 441 76.0
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 1.7e-197 693.0 423 78.3
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 6.3e-197 691.0 422 79.6
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 5.3e-196 688.0 490 70.0
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 5.3e-196 688.0 421 77.9
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 1.2e-195 686.8 425 79.1
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 2.6e-195 685.6 422 76.8
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 4.5e-195 684.9 440 75.2
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 1.0e-194 683.7 441 75.7
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 2.9e-194 682.2 465 74.0
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 1.5e-193 679.9 426 76.5
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 1.9e-193 679.5 446 74.7
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 1.9e-193 679.5 423 77.5
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 7.2e-193 677.6 444 75.0
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 7.2e-193 677.6 461 72.9
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 9.4e-193 677.2 439 74.5
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 1.6e-192 676.4 424 76.9
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 3.6e-192 675.2 448 74.1
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 1.0e-191 673.7 420 76.0
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 6.8e-191 671.0 423 76.1
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 1.5e-190 669.8 479 69.9
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 2.6e-190 669.1 447 72.5
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 3.4e-190 668.7 454 71.8
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 1.7e-189 666.4 446 72.9
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 3.7e-189 665.2 421 77.2
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 3.7e-189 665.2 467 69.8
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 4.8e-189 664.8 473 69.8
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 4.8e-189 664.8 446 72.9
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 4.8e-189 664.8 441 73.2
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 6.3e-189 664.5 448 72.8
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 8.3e-189 664.1 455 72.1
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 8.3e-189 664.1 472 69.9
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 8.3e-189 664.1 420 75.5
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 1.8e-188 662.9 448 72.5
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.8e-188 662.9 423 75.7
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 1.8e-188 662.9 420 75.7
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 1.2e-187 660.2 445 72.4
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 1.6e-187 659.8 423 74.7
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 1.0e-186 657.1 425 75.8
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 1.8e-183 646.4 454 70.7
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 3.0e-183 645.6 378 82.0
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 6.3e-181 637.9 459 70.6
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 2.3e-178 629.4 452 70.4
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 3.8e-178 628.6 380 79.5
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 1.1e-177 627.1 423 73.0
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 7.2e-177 624.4 453 70.2
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 1.2e-174 617.1 382 77.7
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 2.0e-174 616.3 420 71.9
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 9.2e-172 607.4 378 77.2
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 1.3e-170 603.6 384 76.8
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 2.6e-166 589.3 424 69.8
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 3.4e-166 589.0 422 71.6
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 2.4e-164 582.8 337 82.8
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.1e-161 573.9 426 68.3
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 7.3e-161 571.2 405 69.6
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 1.9e-156 556.6 403 68.5
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 2.4e-156 556.2 422 63.3
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 9.2e-156 554.3 419 66.3
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 1.6e-155 553.5 430 65.8
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 7.3e-153 544.7 446 60.1
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 2.3e-151 539.7 445 62.9
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 3.1e-151 539.3 351 74.4
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 4.0e-151 538.9 425 63.8
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 1.9e-140 503.4 360 69.4
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 1.9e-140 503.4 314 77.4
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 8.7e-130 468.0 451 56.5
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 2.4e-124 449.9 419 56.3
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 1.0e-114 417.9 461 48.6
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 2.1e-107 393.7 245 74.7
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 1.1e-103 381.3 246 73.6
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 2.7e-99 366.7 436 46.3
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 7.9e-91 338.6 294 60.5
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 3.0e-90 336.7 294 60.5
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 9.7e-89 331.6 202 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 4.8e-88 329.3 262 59.9
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 5.7e-81 305.8 226 69.9
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 4.5e-70 269.6 211 64.5
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 2.2e-64 250.8 179 68.2
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 2.7e-62 243.8 303 49.8
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 5.6e-60 236.1 443 38.6
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 1.3e-53 214.9 165 64.2
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 9.5e-36 155.6 93 79.6
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 8.1e-35 152.5 104 69.2
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 1.5e-33 148.3 85 84.7
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 6.9e-26 122.9 88 67.0
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 5.3e-18 96.7 58 75.9
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 5.6e-12 76.6 43 86.0


User provided reference genes

Program Settings