Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 5.0e-242 840.9 483 100.0
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 7.1e-180 634.4 401 88.8
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 4.6e-171 605.1 425 81.2
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.8e-114 417.2 451 60.1
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 5.2e-114 415.6 462 57.6
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.8e-114 414.8 465 57.4
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.2e-112 410.2 456 56.8
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.1e-111 407.9 505 53.9
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 6.5e-109 398.7 496 54.6
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 3.2e-108 396.4 456 54.8
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 9.4e-108 394.8 464 55.4
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 3.6e-107 392.9 483 54.0
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 6.1e-107 392.1 460 54.8
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.4e-106 391.0 465 55.9
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 3.0e-106 389.8 436 55.7
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 6.7e-106 388.7 481 53.6
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.4e-103 380.9 504 51.2
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 5.9e-102 375.6 445 53.5
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.7e-101 374.0 458 53.9
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.5e-100 370.9 461 54.2
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.9e-100 370.5 466 53.6
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.2e-100 368.6 479 51.6
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 2.1e-99 367.1 458 52.4
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 4.7e-99 365.9 447 54.4
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 4.7e-99 365.9 450 53.8
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 6.1e-99 365.5 479 53.0
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 4.0e-98 362.8 463 52.1
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.0e-97 360.5 445 53.7
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 2.0e-97 360.5 379 69.7
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.7e-96 357.5 476 50.8
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 4.8e-96 355.9 545 47.9
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 4.8e-96 355.9 433 54.0
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.4e-95 352.4 433 54.3
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.0e-95 352.1 446 53.6
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 7.0e-95 352.1 447 52.8
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.1e-92 344.7 445 51.0
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.5e-92 344.4 476 49.8
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 5.5e-92 342.4 444 52.3
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 9.5e-92 341.7 473 51.6
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.6e-91 340.9 445 51.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 2.8e-91 340.1 457 51.2
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.8e-90 337.4 479 49.9
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 4.0e-90 336.3 535 46.2
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 5.2e-90 335.9 456 51.8
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 2.6e-89 333.6 453 53.2
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 7.5e-89 332.0 454 50.9
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 3.1e-87 326.6 456 49.1
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 7.0e-87 325.5 440 50.2
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 3.5e-86 323.2 443 49.9
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 3.5e-86 323.2 456 48.9
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.7e-85 320.9 457 49.9
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.1e-83 313.9 453 50.1
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 4.7e-83 312.8 462 48.5
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 8.0e-83 312.0 446 48.7
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.3e-82 310.5 440 48.9
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 4.4e-81 306.2 423 50.1
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 9.8e-81 305.1 464 47.2
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.3e-80 304.7 432 49.3
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 2.9e-80 303.5 463 46.7
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 2.4e-79 300.4 432 48.1
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 4.1e-79 299.7 443 46.7
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 6.0e-78 295.8 426 47.9
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 6.6e-77 292.4 451 45.9
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.5e-76 291.2 386 53.6
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.5e-76 291.2 436 47.9
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 2.5e-76 290.4 463 44.7
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.8e-75 287.0 404 47.5
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 8.0e-75 285.4 595 38.7
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 5.8e-73 279.3 423 46.1
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.5e-73 278.9 441 44.9
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.9e-72 276.9 470 44.7
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 6.4e-72 275.8 425 46.1
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 8.3e-72 275.4 433 46.2
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.9e-71 274.2 437 46.0
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 5.4e-71 272.7 394 48.7
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 9.2e-71 271.9 429 44.5
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 4.6e-70 269.6 391 47.8
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 7.8e-70 268.9 458 43.9
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.0e-69 266.9 441 45.1
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 3.0e-69 266.9 452 43.1
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.5e-68 263.8 424 43.4
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 4.7e-67 259.6 449 43.0
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 6.2e-67 259.2 457 40.5
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.4e-66 258.1 457 43.3
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 8.9e-66 255.4 360 50.6
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 5.8e-65 252.7 401 45.9
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 9.9e-65 251.9 356 53.1
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 4.9e-64 249.6 448 40.4
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 8.3e-64 248.8 274 59.9
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 8.3e-64 248.8 427 42.4
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 1.4e-63 248.1 460 40.7
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 5.4e-63 246.1 326 48.5
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.4e-63 246.1 433 41.8
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 7.1e-63 245.7 417 43.6
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 2.1e-62 244.2 427 41.9
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.6e-62 243.0 427 43.6
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 1.0e-61 241.9 410 43.2
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.9e-61 240.0 407 42.8
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.5e-60 237.3 433 40.9
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 4.3e-60 236.5 414 43.0
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 7.3e-60 235.7 412 42.5
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 7.3e-60 235.7 414 42.3
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 9.6e-60 235.3 426 40.6
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-58 231.9 417 42.2
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 4.4e-57 226.5 404 42.1
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 4.4e-57 226.5 479 38.0
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 7.1e-55 219.2 418 39.7
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 1.2e-54 218.4 401 40.1
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.2e-54 218.4 423 41.1
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.6e-51 208.0 413 38.7
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 4.9e-40 169.9 188 52.7
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 5.4e-39 166.4 359 37.0
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.5e-36 157.5 146 63.0
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 5.6e-36 156.4 260 45.4
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.7e-32 144.8 324 39.2
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.3e-29 134.4 120 61.7
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.3e-29 134.4 439 29.2
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 8.7e-29 132.5 440 30.5
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.1e-28 132.1 99 69.7
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 2.8e-27 127.5 486 30.2
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.4e-26 124.4 281 37.4
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 3.1e-26 124.0 212 41.5
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 3.4e-25 120.6 453 28.3
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 4.5e-25 120.2 267 41.2
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.5e-23 113.2 438 27.4
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 4.3e-20 103.6 415 28.4
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.7e-20 103.2 105 55.2
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 3.1e-18 97.4 100 52.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.4e-15 85.9 322 29.8
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.6e-14 85.1 78 57.7
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.6e-14 83.6 68 58.8
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 8.8e-13 79.3 58 67.2
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.1e-12 79.0 66 59.1
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 3.1e-10 70.9 128 41.4
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.0e-08 63.5 57 54.4
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 1.6e-06 58.5 358 24.3


User provided reference genes

Program Settings