Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.3e-191 672.9 337 100.0
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 4.8e-167 591.3 338 89.6
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.1e-163 580.1 331 89.1
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 7.4e-160 567.4 337 85.5
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 3.2e-123 445.7 262 86.6
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 1.1e-99 367.5 340 62.4
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 2.2e-95 353.2 340 59.7
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.8e-90 336.3 352 57.4
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 2.3e-89 333.2 344 57.3
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.2e-87 326.6 329 60.2
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 9.2e-86 321.2 358 53.9
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 3.5e-85 319.3 354 56.8
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.9e-83 313.5 343 55.4
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 1.4e-81 307.4 350 54.0
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 6.8e-81 305.1 361 52.1
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 5.4e-78 295.4 347 51.6
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 4.6e-77 292.4 340 52.4
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 7.8e-77 291.6 343 53.4
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.0e-76 291.2 343 53.4
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 1.1e-75 287.7 355 51.5
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 9.6e-75 284.6 338 51.8
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 1.4e-73 280.8 347 51.3
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 6.9e-73 278.5 349 50.1
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.3e-71 274.2 339 50.4
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 2.4e-70 270.0 332 50.3
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 2.7e-69 266.5 351 49.9
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 3.0e-68 263.1 299 53.2
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 3.0e-68 263.1 336 49.4
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.3e-67 259.6 277 56.7
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 4.3e-67 259.2 342 48.5
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.6e-67 258.1 355 49.3
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.2e-66 255.4 313 50.2
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.4e-65 254.2 277 56.3
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.8e-65 253.8 356 48.9
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.0e-65 252.7 355 47.3
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 5.3e-65 252.3 339 47.2
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.6e-64 250.0 339 46.9
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 5.8e-64 248.8 346 48.0
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.3e-63 247.7 346 47.1
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 1.3e-63 247.7 344 48.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.7e-63 247.3 339 47.5
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.9e-63 245.7 279 53.4
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.1e-61 240.4 352 46.3
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 2.7e-61 240.0 342 46.5
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.5e-61 239.6 342 45.3
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 2.3e-60 236.9 347 45.2
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 5.1e-60 235.7 264 53.8
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 6.7e-60 235.3 323 47.4
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 8.7e-60 235.0 347 45.0
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 8.7e-60 235.0 350 44.6
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 8.7e-60 235.0 354 46.9
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 4.3e-59 232.6 352 44.0
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 5.6e-59 232.3 341 45.2
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 7.4e-59 231.9 342 45.6
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 9.6e-59 231.5 338 44.7
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 2.1e-58 230.3 340 45.3
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.1e-57 228.0 349 44.7
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 2.4e-57 226.9 339 44.8
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 2.4e-57 226.9 306 46.1
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 3.1e-57 226.5 338 44.7
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 5.3e-57 225.7 350 44.9
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.2e-56 224.6 331 46.2
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.5e-56 224.2 343 45.2
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 2.0e-56 223.8 334 46.1
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.0e-55 221.5 330 44.8
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.0e-55 221.5 345 44.3
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.0e-55 221.5 323 46.4
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.3e-55 221.1 345 45.2
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 2.9e-55 219.9 344 43.3
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.8e-55 219.5 368 44.0
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 4.9e-55 219.2 323 46.1
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.1e-54 218.0 350 44.9
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.9e-54 217.2 344 43.0
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.6e-53 214.2 276 51.4
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 2.1e-53 213.8 335 44.5
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 6.0e-53 212.2 301 46.5
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.0e-52 211.5 358 43.6
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.5e-51 206.8 347 42.9
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.5e-51 206.8 339 41.9
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 7.4e-51 205.3 338 45.0
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 9.6e-51 204.9 338 42.6
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.3e-50 204.5 346 42.5
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 1.3e-50 204.5 311 47.9
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 1.3e-50 204.5 321 47.4
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.8e-50 203.4 355 40.8
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 4.8e-50 202.6 338 44.4
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 6.3e-50 202.2 304 45.7
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 8.2e-50 201.8 348 42.5
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 9.0e-49 198.4 310 45.8
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 1.5e-48 197.6 268 46.6
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.5e-48 196.1 354 42.4
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 7.6e-48 195.3 335 41.2
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.3e-47 194.5 351 38.7
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.2e-47 193.7 314 45.5
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 1.1e-46 191.4 349 41.3
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.1e-46 191.4 340 43.2
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.4e-46 191.0 355 40.6
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.9e-46 190.7 314 45.2
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 4.2e-46 189.5 352 38.6
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.2e-46 189.5 303 42.9
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 5.5e-46 189.1 287 43.6
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 5.5e-46 189.1 351 39.9
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 9.3e-46 188.3 330 42.7
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.6e-45 187.6 317 42.3
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 3.5e-45 186.4 271 48.7
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 3.5e-45 186.4 296 42.2
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 4.6e-45 186.0 234 48.3
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.1e-45 185.7 276 46.7
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.0e-44 184.9 301 43.2
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.3e-44 184.5 348 40.2
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.8e-44 184.1 301 42.2
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.8e-44 184.1 341 42.2
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 3.0e-44 183.3 304 43.1
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 6.7e-44 182.2 310 43.2
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 2.5e-43 180.3 287 41.5
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.3e-43 179.9 291 45.0
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 1.6e-42 177.6 261 47.5
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 3.7e-42 176.4 205 53.2
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 6.3e-42 175.6 294 41.8
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 8.2e-42 175.3 192 51.0
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 8.2e-42 175.3 210 52.9
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 8.2e-42 175.3 323 42.1
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 6.9e-41 172.2 298 40.9
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.0e-40 170.6 237 46.0
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 3.4e-40 169.9 429 36.8
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.7e-39 167.5 220 50.0
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 2.2e-39 167.2 302 41.1
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.8e-39 166.4 283 42.4
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 2.5e-38 163.7 227 44.1
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 2.5e-38 163.7 261 41.0
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 7.2e-38 162.2 299 41.5
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 2.7e-37 160.2 250 44.0
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.5e-32 144.4 294 37.8
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.6e-32 143.7 285 37.9
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.3e-31 141.4 331 36.0
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 2.9e-31 140.2 337 38.0
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.9e-30 137.5 226 44.7
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 9.4e-30 135.2 296 38.5
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 3.9e-28 129.8 363 33.1
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 5.1e-28 129.4 296 36.5
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 6.7e-28 129.0 210 41.4
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 2.0e-27 127.5 311 34.4
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 3.3e-27 126.7 314 34.4
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.8e-26 122.9 340 35.0
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.3e-23 114.8 274 35.8
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.7e-23 114.4 229 38.4
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.1e-22 111.7 124 54.0
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.6e-21 107.8 152 42.8
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 6.1e-21 105.9 122 52.5
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 6.7e-20 102.4 97 56.7
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 4.4e-19 99.8 184 37.0
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 5.7e-19 99.4 213 35.7
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 8.2e-18 95.5 183 37.7
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.4e-12 78.2 56 62.5
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 4.5e-08 63.2 120 40.0
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.7e-07 61.2 171 33.3
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.2e-07 60.8 92 40.2
BcaB06g25850 Brassica carinata HOM05D002346 ORTHO05D002452 5.0e-07 59.7 135 32.6
Glyma.15G179600 Glycine max HOM05D001047 ORTHO05D000768 6.5e-07 59.3 122 40.2
Pp3c25_6330 Physcomitrium patens HOM05D002346 ORTHO05D002452 8.5e-07 58.9 139 39.6
A05p31930 Brassica napus HOM05D002346 ORTHO05D002452 1.1e-06 58.5 134 32.1
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.1e-06 58.5 48 54.2
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 1.1e-06 58.5 48 54.2
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 3.2e-06 57.0 120 37.5
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 9.5e-06 55.5 118 37.3
Lj6g0004228 Lotus japonicus HOM05D001047 ORTHO05D000768 9.5e-06 55.5 195 29.2


User provided reference genes

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