Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G013000 Cucumis sativus L. HOM05D001070 ORTHO05D002096 6.0e-49 197.2 101 100.0
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 1.7e-19 99.4 86 62.8
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 7.9e-17 90.5 105 52.4
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 3.9e-16 88.2 105 50.5
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 3.9e-16 88.2 105 50.5
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 8.8e-16 87.0 105 48.6
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 3.3e-15 85.1 107 50.5
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 3.3e-15 85.1 107 50.5
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 5.7e-15 84.3 107 50.5
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 5.7e-15 84.3 107 50.5
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 5.7e-15 84.3 107 50.5
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 5.7e-15 84.3 107 50.5
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 5.7e-15 84.3 107 50.5
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 5.7e-15 84.3 107 50.5
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 5.7e-15 84.3 105 46.7
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.7e-15 83.6 105 48.6
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.3e-14 83.2 105 47.6
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.3e-14 83.2 105 47.6
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.3e-14 83.2 105 47.6
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 1.7e-14 82.8 107 49.5
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.7e-14 82.8 105 48.6
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.2e-14 82.4 105 46.7
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.8e-14 82.0 105 46.7
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.4e-13 79.7 105 46.7
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.4e-13 79.7 105 46.7
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.4e-13 79.7 105 46.7
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.4e-13 79.7 105 46.7
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.4e-13 79.7 105 46.7
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 1.8e-13 79.3 104 50.0
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 1.8e-13 79.3 104 50.0
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 1.8e-13 79.3 104 50.0
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 1.8e-13 79.3 104 50.0
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 1.8e-13 79.3 104 50.0
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 1.8e-13 79.3 104 50.0
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.3e-13 77.8 102 46.1
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.3e-13 77.8 102 46.1
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 7.0e-13 77.4 109 44.0
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 9.1e-13 77.0 100 50.0
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 1.2e-12 76.6 105 46.7
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 1.6e-12 76.3 105 46.7
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.6e-12 76.3 105 46.7
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.6e-12 75.5 102 46.1
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 4.5e-12 74.7 102 48.0
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-12 74.7 102 44.1
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 1.0e-11 73.6 106 44.3
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 1.3e-11 73.2 105 44.8
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 1.3e-11 73.2 105 44.8
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 1.7e-11 72.8 104 45.2
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 2.9e-11 72.0 105 44.8
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-11 72.0 105 42.9
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 2.5e-10 68.9 100 44.0
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.6e-09 66.2 91 41.8
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 39.0
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 41.0
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 41.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 39.0
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 39.0
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 39.0
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 39.0
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-09 65.1 105 39.0
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 1.8e-08 62.8 90 43.3
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 2.3e-08 62.4 105 41.0
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 2.0e-07 59.3 110 39.1
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.4e-07 58.2 101 39.6
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 9.7e-07 57.0 105 37.1
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 1.3e-06 56.6 51 58.8
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 1.3e-06 56.6 51 56.9
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 2.2e-06 55.8 83 41.0
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.8e-06 55.5 51 58.8
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.8e-06 55.5 51 54.9
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 2.8e-06 55.5 51 56.9
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-06 55.5 93 40.9
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 3.7e-06 55.1 75 49.3
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 4.8e-06 54.7 51 54.9
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 4.8e-06 54.7 51 54.9
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 4.8e-06 54.7 51 54.9
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 4.8e-06 54.7 51 54.9
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.3e-06 54.3 51 54.9
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.3e-06 54.3 83 41.0
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 6.3e-06 54.3 87 41.4
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 6.3e-06 54.3 89 41.6


User provided reference genes

Program Settings