Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 8.4e-50 200.3 119 100.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.8e-34 148.3 130 80.8
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.9e-32 140.6 106 80.2
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 3.9e-23 111.7 108 62.0
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.2e-16 90.1 108 54.6
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.4e-15 86.7 113 45.1
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.3e-15 85.9 123 54.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 9.7e-14 80.5 109 48.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.7e-13 79.7 95 53.7
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.7e-13 79.7 107 45.8
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.2e-13 79.3 126 46.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.8e-13 79.0 112 47.3
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.8e-13 78.2 108 47.2
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.3e-13 77.8 108 49.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 8.2e-13 77.4 109 49.5
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.1e-12 77.0 121 42.1
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.4e-12 76.6 107 52.3
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.8e-12 76.3 109 44.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.8e-12 76.3 123 39.8
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.8e-12 76.3 108 47.2
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.8e-12 76.3 112 44.6
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.8e-12 76.3 101 54.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 2.4e-12 75.9 107 58.9
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.4e-12 75.9 108 46.3
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.1e-12 75.5 109 50.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 3.1e-12 75.5 118 45.8
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 3.1e-12 75.5 135 45.2
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 3.1e-12 75.5 101 54.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 5.3e-12 74.7 107 48.6
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 5.3e-12 74.7 123 47.2
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 5.3e-12 74.7 121 44.6
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.9e-12 74.3 115 44.3
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 6.9e-12 74.3 120 43.3
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.1e-12 73.9 101 52.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.1e-12 73.9 120 44.2
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.2e-11 73.6 115 45.2
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.5e-11 73.2 123 47.2
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.5e-11 73.2 123 47.2
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-11 73.2 107 57.0
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.5e-11 73.2 124 46.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.0e-11 72.8 123 46.3
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.0e-11 72.8 107 44.9
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.6e-11 72.4 107 42.1
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.6e-11 72.4 107 59.8
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 3.4e-11 72.0 108 44.4
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-11 72.0 107 55.1
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.4e-11 72.0 107 56.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.5e-11 71.6 111 43.2
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 4.5e-11 71.6 113 43.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.5e-11 71.6 112 46.4
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.5e-11 71.6 126 39.7
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 5.9e-11 71.2 118 43.2
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 5.9e-11 71.2 120 55.0
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 5.9e-11 71.2 117 40.2
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 5.9e-11 71.2 117 40.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.9e-11 71.2 117 40.2
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 7.7e-11 70.9 109 42.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 7.7e-11 70.9 100 43.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.7e-11 70.9 108 47.2
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.7e-11 70.9 108 47.2
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.7e-11 70.9 115 52.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.7e-11 70.9 115 52.2
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.0e-10 70.5 96 57.3
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.0e-10 70.5 120 42.5
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.3e-10 70.1 101 43.6
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.7e-10 69.7 102 47.1
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.7e-10 69.7 111 43.2
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.2e-10 69.3 127 40.2
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.8e-10 68.6 115 47.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.8e-10 68.6 118 45.8
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.8e-10 68.6 110 44.5
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.8e-10 68.6 110 46.4
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.8e-10 68.6 113 39.8
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.8e-10 68.6 109 40.4
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 5.0e-10 68.2 97 47.4
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.0e-10 68.2 111 42.3
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.0e-10 68.2 112 41.1
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 5.0e-10 68.2 124 44.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.0e-10 68.2 109 41.3
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 8.5e-10 67.4 94 47.9
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.4e-09 66.6 118 43.2
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.4e-09 66.6 116 41.4
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.4e-09 66.6 112 43.8
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.9e-09 66.2 95 46.3
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.9e-09 66.2 103 42.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.9e-09 66.2 104 44.2
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.5e-09 65.9 110 40.9
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.5e-09 65.9 94 46.8
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.5e-09 65.9 108 46.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.5e-09 65.9 126 42.1
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.2e-09 65.5 117 42.7
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.2e-09 65.5 99 42.4
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.2e-09 65.5 105 43.8
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.2e-09 65.5 95 45.3
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.2e-09 65.1 94 42.6
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.2e-09 65.1 107 45.8
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.2e-09 65.1 107 43.0
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 4.2e-09 65.1 95 42.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 4.2e-09 65.1 95 42.1
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 4.2e-09 65.1 112 41.1
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.5e-09 64.7 96 43.8
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 5.5e-09 64.7 98 44.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 5.5e-09 64.7 105 43.8
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.2e-09 64.3 94 43.6
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.2e-09 64.3 106 41.5
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 9.4e-09 63.9 99 41.4
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 9.4e-09 63.9 99 41.4
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 9.4e-09 63.9 99 41.4
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 9.4e-09 63.9 99 41.4
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 9.4e-09 63.9 110 40.9
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 9.4e-09 63.9 109 42.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.2e-08 63.5 94 43.6
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-08 63.5 97 44.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-08 63.5 97 44.3
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.2e-08 63.5 119 53.8
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.2e-08 63.5 110 39.1
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.2e-08 63.5 96 42.7
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.2e-08 63.5 111 56.8
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-08 63.5 104 42.3
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-08 63.5 106 41.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-08 63.2 94 43.6
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.6e-08 63.2 96 45.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.6e-08 63.2 103 40.8
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.6e-08 63.2 116 43.1
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.6e-08 63.2 95 44.2
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.6e-08 63.2 94 46.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.6e-08 63.2 109 44.0
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.1e-08 62.8 107 39.3
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.1e-08 62.8 126 41.3
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.1e-08 62.8 108 45.4
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.1e-08 62.8 99 45.5
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.7e-08 62.4 124 41.1
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.7e-08 62.4 107 40.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.6e-08 62.0 107 35.5
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 4.7e-08 61.6 109 41.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.7e-08 61.6 108 42.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.7e-08 61.6 108 41.7
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 6.1e-08 61.2 114 40.4
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.9e-08 60.8 109 40.4
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.0e-07 60.5 101 44.6
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.0e-07 60.5 101 44.6
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.4e-07 60.1 115 36.5
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-07 60.1 109 40.4
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-07 60.1 109 40.4
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.4e-07 60.1 103 54.4
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-07 60.1 110 53.6
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.8e-07 59.7 110 37.3
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.8e-07 59.7 128 39.1
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.3e-07 59.3 106 58.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.0e-07 58.9 126 35.7
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.0e-07 58.9 113 40.7
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 3.9e-07 58.5 109 40.4
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 5.1e-07 58.2 106 42.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 6.7e-07 57.8 111 40.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 6.7e-07 57.8 108 39.8
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.7e-07 57.8 107 38.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 8.8e-07 57.4 109 41.3
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-06 57.0 108 39.8
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 3.3e-06 55.5 120 35.0
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.4e-06 55.1 107 35.5
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 5.7e-06 54.7 108 38.9
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 5.7e-06 54.7 108 38.9
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 5.7e-06 54.7 108 38.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.7e-06 54.7 107 40.2
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.4e-06 54.3 107 41.1


User provided reference genes

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