Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 8.9e-183 643.7 368 100.0
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.4e-164 583.2 355 93.8
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.8e-152 542.3 368 86.4
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.4e-134 482.3 355 80.3
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 4.3e-129 465.3 348 74.4
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 4.9e-125 451.8 346 72.8
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.2e-124 449.1 351 71.8
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 2.0e-102 376.7 352 61.6
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.0e-101 374.4 347 64.3
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.9e-101 372.9 352 60.8
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.1e-100 370.9 350 64.6
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.1e-100 370.9 350 63.4
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.1e-100 370.9 350 63.4
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.9e-100 370.2 353 60.9
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.8e-96 356.3 351 58.4
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 5.9e-94 348.6 350 59.1
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 6.5e-93 345.1 364 61.0
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 6.5e-93 345.1 350 60.6
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.1e-92 344.4 352 58.2
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.9e-92 343.6 350 57.1
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 8.8e-90 334.7 349 63.6
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 5.7e-89 332.0 337 61.7
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.8e-87 327.0 344 61.0
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.4e-87 326.6 349 59.6
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 5.3e-87 325.5 354 58.2
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.3e-87 325.5 354 58.2
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.2e-86 324.3 349 53.0
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.6e-86 323.9 352 56.8
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.6e-86 323.9 355 60.0
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 2.0e-86 323.6 356 56.2
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.5e-86 322.8 354 54.8
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 4.5e-86 322.4 352 57.1
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 7.7e-86 321.6 350 53.7
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.2e-85 320.1 357 57.7
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.5e-84 317.4 355 57.2
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 3.2e-84 316.2 354 54.5
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 4.2e-84 315.8 353 58.9
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 4.2e-84 315.8 353 58.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.5e-84 315.5 351 58.7
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.2e-84 315.1 354 54.5
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 7.2e-84 315.1 355 57.7
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.2e-83 314.3 361 53.7
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.2e-83 314.3 350 57.7
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 2.7e-83 313.2 352 56.2
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 6.8e-82 308.5 344 53.8
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.2e-81 307.8 353 55.2
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 2.6e-81 306.6 356 55.1
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 9.8e-81 304.7 348 52.0
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 3.7e-80 302.8 354 56.5
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 3.1e-79 299.7 349 53.3
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.2e-78 297.7 359 54.0
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.5e-78 296.2 360 51.1
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 2.3e-77 293.5 351 54.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 6.6e-77 292.0 364 51.9
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.1e-76 291.2 344 54.9
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.2e-75 287.7 355 51.5
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 1.0e-74 284.6 342 52.3
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 2.3e-74 283.5 358 55.0
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.2e-73 281.2 348 52.3
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.2e-73 281.2 352 52.0
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 4.4e-73 279.3 352 51.4
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 4.9e-72 275.8 358 50.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 4.9e-72 275.8 348 51.4
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 8.3e-72 275.0 368 49.7
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.1e-71 272.7 349 49.9
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 4.1e-71 272.7 348 51.1
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 4.1e-71 272.7 350 53.1
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 7.8e-70 268.5 353 49.6
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 7.8e-70 268.5 390 46.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.3e-69 267.7 360 49.7
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.3e-69 267.7 353 49.9
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.3e-69 267.7 353 49.9
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.3e-69 266.9 351 50.7
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 8.6e-69 265.0 356 52.0
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.5e-68 263.5 361 50.4
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.2e-67 261.2 350 50.3
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.2e-67 261.2 350 50.3
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 2.8e-67 260.0 352 48.6
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.0e-66 258.1 338 48.2
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 5.2e-66 255.8 374 47.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 8.9e-66 255.0 341 48.1
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.2e-65 254.6 331 49.2
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.2e-65 254.6 347 48.7
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.4e-65 253.1 356 46.1
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.9e-64 249.2 384 46.1
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.2e-62 244.6 277 59.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.2e-62 244.6 355 45.6
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.2e-62 244.6 370 44.9
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 6.0e-62 242.3 363 47.1
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 1.0e-61 241.5 324 47.5
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 3.0e-61 240.0 374 47.6
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.3e-58 230.3 349 44.7
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.2e-57 228.0 379 46.7
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.2e-57 228.0 377 47.2
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.4e-57 226.1 358 44.4
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 4.9e-56 222.6 364 45.1
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 6.4e-56 222.2 364 45.6
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.9e-55 220.7 332 43.4
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 3.2e-55 219.9 357 47.3
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 5.4e-55 219.2 352 43.8
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 7.0e-55 218.8 347 46.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 7.8e-54 215.3 345 43.2
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 8.6e-53 211.8 362 44.5
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 8.6e-53 211.8 373 44.8
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.1e-50 203.4 334 42.5
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.8e-50 202.2 347 41.2
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 2.6e-49 200.3 306 43.8
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.3e-48 198.0 331 45.3
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.3e-48 198.0 341 41.1
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 6.4e-48 195.7 344 43.0
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-47 194.9 339 43.4
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 9.2e-47 191.8 362 44.5
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 4.6e-46 189.5 348 38.2
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.3e-45 188.0 293 49.8
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.3e-44 183.3 314 41.1
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 2.8e-43 180.3 357 39.8
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 2.4e-42 177.2 338 39.1
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.3e-40 171.4 209 53.6
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.2e-40 170.6 357 37.8
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.5e-36 157.9 341 36.4
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.8e-34 151.0 277 43.7
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 3.4e-33 146.7 344 36.0
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.4e-31 141.4 317 34.1
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 2.7e-30 137.1 329 31.9
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 6.0e-30 136.0 321 37.7
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 7.8e-30 135.6 379 35.4
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.1e-28 131.7 356 32.9
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.1e-28 131.7 348 32.2
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.9e-28 131.0 143 51.0
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.3e-28 130.2 334 32.9
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.3e-27 128.3 200 44.5
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.8e-27 126.3 107 63.6
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 4.8e-27 126.3 309 32.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.2e-23 113.2 109 56.9
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 2.3e-21 107.5 197 47.2
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 5.1e-21 106.3 171 43.3
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.8e-18 97.8 89 55.1
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 9.0e-18 95.5 426 27.0
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.4e-15 88.2 173 37.0
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.9e-15 87.8 354 31.6
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 3.0e-13 80.5 267 33.0
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.8e-10 71.2 94 44.7
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 2.0e-09 67.8 154 34.4
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-08 65.1 140 42.9
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 3.8e-08 63.5 63 52.4
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 1.1e-07 62.0 43 62.8
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 2.5e-07 60.8 177 33.3


User provided reference genes

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