Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.1e-157 558.9 264 100.0
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.5e-110 402.5 222 88.3
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.1e-97 357.5 196 88.3
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 5.2e-84 315.1 216 75.0
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 4.4e-83 312.0 196 82.1
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.3e-79 300.4 220 67.3
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.0e-76 290.8 212 67.0
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.0e-76 290.8 212 65.6
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.0e-76 290.8 220 65.9
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.8e-76 290.0 220 65.9
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.3e-76 289.7 221 66.1
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.2e-75 287.3 220 64.5
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.2e-75 287.3 220 64.1
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.2e-75 287.3 206 68.0
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 7.5e-75 284.6 220 65.0
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-74 283.9 219 62.6
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-74 283.9 215 64.2
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 4.9e-74 282.0 220 63.2
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 4.9e-74 282.0 212 63.7
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 8.3e-74 281.2 215 63.7
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.1e-73 278.9 215 63.3
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 7.0e-73 278.1 194 68.6
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 9.2e-73 277.7 194 68.6
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-72 277.3 221 62.4
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.2e-72 277.3 189 70.9
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-72 276.9 221 62.4
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 2.7e-72 276.2 215 61.4
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 2.7e-72 276.2 193 69.4
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.5e-72 275.8 214 64.5
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 4.6e-72 275.4 221 62.0
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 5.9e-72 275.0 216 61.1
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.8e-72 274.6 194 66.0
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.0e-71 274.2 189 69.8
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-71 273.9 218 60.1
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.3e-71 273.1 213 60.6
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 2.3e-71 273.1 196 69.4
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.9e-71 272.3 218 59.6
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 3.9e-71 272.3 216 62.0
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 5.0e-71 271.9 219 63.0
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.6e-71 271.2 191 66.0
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.6e-71 271.2 207 68.1
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 8.6e-71 271.2 212 62.3
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 8.6e-71 271.2 199 65.3
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.1e-70 270.8 206 63.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.9e-70 270.0 212 62.3
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.9e-70 270.0 194 66.0
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.5e-70 269.6 220 59.5
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.5e-70 269.6 223 61.4
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.3e-70 269.2 220 62.3
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.3e-70 269.2 220 62.3
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.3e-70 269.2 220 60.5
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 3.3e-70 269.2 212 62.7
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 4.3e-70 268.9 198 65.2
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.3e-70 268.9 202 65.8
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 5.6e-70 268.5 206 65.0
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.3e-70 268.1 213 61.0
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 7.3e-70 268.1 199 65.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 1.2e-69 267.3 206 63.1
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.2e-69 267.3 215 60.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.6e-69 266.9 221 61.5
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.1e-69 266.5 207 63.8
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 2.1e-69 266.5 204 62.7
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 2.8e-69 266.2 212 61.3
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.8e-69 266.2 193 65.3
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.8e-69 266.2 197 66.0
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.7e-69 265.4 210 61.9
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 6.2e-69 265.0 201 65.7
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 8.0e-69 264.6 206 64.6
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.0e-69 264.6 206 64.1
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.0e-68 264.2 204 63.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.0e-68 264.2 220 60.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.0e-68 264.2 222 58.1
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-68 263.8 204 62.3
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 1.4e-68 263.8 204 62.3
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.8e-68 263.5 200 62.5
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.3e-68 263.1 206 64.1
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 4.0e-68 262.3 204 62.3
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 4.0e-68 262.3 204 62.3
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 4.0e-68 262.3 205 62.9
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.0e-68 262.3 207 63.3
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 5.2e-68 261.9 204 62.7
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 5.2e-68 261.9 204 62.7
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 5.2e-68 261.9 204 62.7
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 5.2e-68 261.9 220 59.1
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.2e-68 261.9 204 62.3
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.2e-68 261.9 214 59.3
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 6.8e-68 261.5 206 62.6
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 8.9e-68 261.2 204 63.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 8.9e-68 261.2 207 62.8
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 8.9e-68 261.2 193 64.8
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.2e-67 260.8 206 62.1
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.2e-67 260.8 206 62.1
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.5e-67 260.4 205 61.5
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.6e-67 259.6 213 59.2
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.4e-67 258.8 199 61.8
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.8e-67 258.5 200 62.0
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 9.8e-67 257.7 214 57.9
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.7e-66 256.9 212 61.8
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 2.2e-66 256.5 206 63.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 2.2e-66 256.5 206 61.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.2e-66 256.5 184 66.8
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.2e-66 256.5 184 66.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.9e-66 256.1 183 65.6
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.9e-66 255.4 206 60.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 6.4e-66 255.0 206 60.2
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.4e-65 253.8 199 63.8
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.9e-65 253.4 189 64.6
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.9e-65 253.4 189 63.0
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.4e-65 253.1 193 62.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.4e-65 251.9 232 56.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.6e-64 250.4 183 63.9
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.6e-64 250.4 211 58.8
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.6e-64 250.4 189 60.8
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.6e-64 248.8 232 55.6
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 6.0e-64 248.4 205 58.5
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.3e-63 247.3 196 62.8
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.3e-63 247.3 207 58.0
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.3e-63 247.3 209 58.9
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.7e-63 246.9 207 58.9
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.7e-63 246.9 182 64.3
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.7e-63 246.9 194 59.8
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 3.0e-63 246.1 190 62.1
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 6.6e-63 245.0 214 57.5
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-62 244.2 211 58.3
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.9e-62 243.4 207 58.5
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 2.5e-62 243.0 247 52.6
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.1e-60 237.7 192 57.3
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-60 237.7 184 63.0
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.4e-60 237.3 215 57.2
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 5.2e-60 235.3 227 52.4
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 6.8e-60 235.0 227 52.4
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.4e-59 232.3 231 53.2
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 4.9e-58 228.8 220 55.5
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 3.2e-57 226.1 214 53.3
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.1e-56 223.4 223 51.1
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 4.6e-56 222.2 151 73.5
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.6e-53 213.8 168 60.7
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 5.2e-52 208.8 152 68.4
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.2e-51 207.6 197 51.8
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.1e-49 199.1 161 64.0
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.5e-48 196.1 212 49.1
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 6.0e-48 195.3 186 51.6
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 8.6e-47 191.4 219 46.1
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.0e-39 167.9 210 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.8e-36 157.1 192 44.3
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-35 154.5 177 49.7
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.1e-30 137.9 209 37.8
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.7e-23 112.1 137 48.9
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 6.2e-21 105.5 90 62.2
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.2e-18 97.1 69 66.7
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.5e-17 92.4 83 54.2
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 7.1e-17 92.0 65 70.8
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 3.5e-16 89.7 54 74.1
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 6.0e-16 89.0 54 74.1
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.1e-15 85.9 65 66.2
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.3e-14 83.2 46 82.6
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.3e-10 71.2 36 83.3
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.9e-10 70.1 42 76.2
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 6.5e-10 68.9 53 60.4
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.6e-08 64.3 48 66.7
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 4.6e-08 62.8 39 71.8


User provided reference genes

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