Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.5e-80 302.0 145 100.0
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.5e-40 169.1 86 93.0
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 9.6e-40 167.2 86 93.0
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.1e-39 166.0 86 91.9
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.7e-33 144.4 86 77.9
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 9.6e-32 140.6 86 76.7
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 6.2e-31 137.9 86 72.1
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.4e-30 136.7 86 73.3
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.3e-30 134.8 86 73.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 9.0e-30 134.0 86 70.9
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.0e-29 132.9 86 69.8
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.6e-29 132.5 90 70.0
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.4e-29 132.1 86 67.4
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.8e-29 131.3 86 69.8
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 7.6e-29 131.0 86 69.8
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.9e-29 130.6 86 68.6
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.9e-29 130.6 86 68.6
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.2e-28 129.4 86 68.6
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 2.9e-28 129.0 86 69.8
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.9e-28 129.0 86 66.3
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.8e-28 128.6 86 67.4
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.8e-28 128.6 86 69.8
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 4.9e-28 128.3 93 63.4
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 6.4e-28 127.9 86 67.4
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 6.4e-28 127.9 86 67.4
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 8.4e-28 127.5 86 69.8
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 8.4e-28 127.5 86 69.8
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 8.4e-28 127.5 86 69.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 8.4e-28 127.5 86 66.3
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 8.4e-28 127.5 86 66.3
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 8.4e-28 127.5 86 68.6
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-27 127.1 86 68.6
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.1e-27 127.1 86 65.1
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-27 127.1 86 66.3
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.4e-27 126.7 86 69.8
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.9e-27 126.3 86 68.6
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.9e-27 126.3 86 65.1
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.9e-27 126.3 86 67.4
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.9e-27 126.3 86 66.3
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.9e-27 126.3 86 65.1
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.9e-27 126.3 86 66.3
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.4e-27 125.9 86 68.6
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 2.4e-27 125.9 86 66.3
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.4e-27 125.9 128 52.3
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.4e-27 125.9 86 67.4
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.4e-27 125.9 86 67.4
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 3.2e-27 125.6 86 67.4
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.2e-27 125.6 86 67.4
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 4.2e-27 125.2 86 66.3
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 4.2e-27 125.2 86 66.3
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 4.2e-27 125.2 86 66.3
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.2e-27 125.2 86 65.1
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.5e-27 124.8 86 68.6
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.5e-27 124.8 86 68.6
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 5.5e-27 124.8 86 66.3
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 7.1e-27 124.4 86 66.3
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 9.3e-27 124.0 86 66.3
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 9.3e-27 124.0 86 65.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-26 123.6 86 66.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.2e-26 123.6 86 65.1
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.2e-26 123.6 86 66.3
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-26 123.6 86 65.1
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.2e-26 123.6 86 66.3
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.2e-26 123.6 86 65.1
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.1e-26 122.9 86 65.1
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.1e-26 122.9 82 68.3
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.1e-26 122.9 86 67.4
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.7e-26 122.5 86 68.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.7e-26 122.5 86 65.1
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-26 122.5 86 65.1
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-26 122.5 86 65.1
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.5e-26 122.1 86 64.0
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.5e-26 122.1 86 65.1
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 3.5e-26 122.1 86 64.0
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.5e-26 122.1 86 64.0
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 3.5e-26 122.1 86 66.3
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 4.6e-26 121.7 86 64.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 4.6e-26 121.7 86 61.6
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 4.6e-26 121.7 86 65.1
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.6e-26 121.7 86 64.0
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.6e-26 121.7 86 64.0
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.6e-26 121.7 86 66.3
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 6.0e-26 121.3 86 64.0
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.0e-26 121.3 86 64.0
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.9e-26 120.9 86 64.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 7.9e-26 120.9 86 66.3
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.9e-26 120.9 86 67.4
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.0e-25 120.6 86 66.3
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.0e-25 120.6 86 66.3
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.3e-25 120.2 86 64.0
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.3e-25 120.2 93 62.4
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.3e-25 120.2 86 62.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.8e-25 119.8 86 62.8
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.8e-25 119.8 86 59.3
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.8e-25 119.8 86 64.0
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 2.3e-25 119.4 86 65.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 2.3e-25 119.4 86 65.1
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 3.0e-25 119.0 86 65.1
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 3.9e-25 118.6 86 62.8
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.9e-25 118.6 86 64.0
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 6.7e-25 117.9 86 64.0
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 6.7e-25 117.9 86 62.8
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 8.7e-25 117.5 86 61.6
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.1e-24 117.1 86 64.0
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.1e-24 117.1 86 64.0
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.5e-24 116.7 86 62.8
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.5e-24 116.7 86 62.8
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.5e-24 116.7 83 63.9
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.5e-24 116.7 86 62.8
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.5e-24 116.7 83 62.7
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.9e-24 116.3 86 62.8
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 2.5e-24 115.9 86 62.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 2.5e-24 115.9 86 62.8
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.5e-24 115.9 86 65.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 3.3e-24 115.5 128 48.4
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.3e-24 115.2 86 64.0
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 7.4e-24 114.4 86 61.6
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 7.4e-24 114.4 86 61.6
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.1e-23 112.8 86 62.8
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.7e-23 112.1 86 64.0
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 3.7e-23 112.1 85 60.0
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 3.7e-23 112.1 85 60.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 3.7e-23 112.1 85 60.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.7e-23 112.1 86 61.6
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.7e-23 112.1 86 58.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 6.2e-23 111.3 86 59.3
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 8.2e-23 110.9 86 60.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.4e-22 110.2 86 59.3
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 5.3e-22 108.2 86 58.1
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-21 106.7 86 57.0
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.5e-21 106.7 86 61.6
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 5.8e-21 104.8 125 46.4
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.0e-20 104.0 86 55.8
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.2e-20 102.8 86 54.7
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 3.8e-20 102.1 86 54.7
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 8.4e-20 100.9 74 62.2
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.4e-19 100.1 86 53.5
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 4.2e-19 98.6 86 59.3
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.6e-18 96.7 86 53.5
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 3.0e-17 92.4 86 50.0
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 8.7e-17 90.9 168 35.1
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.5e-16 90.1 117 41.0
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 4.8e-15 85.1 86 46.5
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 7.7e-13 77.8 64 56.2
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 7.7e-13 77.8 85 42.4
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.4e-11 73.6 85 38.8
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 5.5e-11 71.6 86 36.0
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.9e-09 65.5 50 58.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 3.9e-09 65.5 50 58.0
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 5.1e-09 65.1 80 45.0
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-08 63.5 46 60.9
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-08 63.5 64 46.9
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 3.3e-08 62.4 39 74.4
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 3.7e-07 58.9 40 65.0


User provided reference genes

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