Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G011080 Cucumis sativus L. HOM05D000176 ORTHO05D009654 1.7e-30 135.2 60 100.0
MELO3C030021.2 Cucumis melo HOM05D000176 ORTHO05D000106 3.3e-18 94.4 57 71.9
MELO3C001396.2 Cucumis melo HOM05D000176 ORTHO05D009654 1.2e-17 92.4 57 70.2
MELO3C027926.2 Cucumis melo HOM05D007519 ORTHO05D009654 6.2e-17 90.1 56 67.9
MELO3C031987.2 Cucumis melo HOM05D000176 ORTHO05D009654 8.1e-17 89.7 57 68.4
MELO3C012803.2 Cucumis melo HOM05D007519 ORTHO05D009654 1.2e-15 85.9 57 64.9
MELO3C034615.2 Cucumis melo HOM05D000176 ORTHO05D009654 1.2e-15 85.9 57 64.9
MELO3C032988.2 Cucumis melo HOM05D000176 ORTHO05D009654 1.5e-15 85.5 57 63.2
MELO3C034625.2 Cucumis melo HOM05D007519 ORTHO05D009654 4.4e-15 84.0 57 64.9
MELO3C034271.2 Cucumis melo HOM05D000176 ORTHO05D009654 1.9e-13 78.6 47 70.2
MELO3C029334.2 Cucumis melo HOM05D007519 ORTHO05D009654 3.0e-11 71.2 47 63.8
ClCG06G006800 Citrullus lanatus HOM05D000176 ORTHO05D000013 1.8e-08 62.0 46 56.5
CsaV3_5G015580 Cucumis sativus L. HOM05D000176 ORTHO05D000106 8.9e-08 59.7 50 48.0
ClCG11G000230 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.5e-07 58.9 50 48.0
QL02p053683 Quercus lobata HOM05D000176 ORTHO05D000106 2.0e-07 58.5 44 54.5
A06p04680 Brassica napus HOM05D000176 ORTHO05D003511 3.4e-07 57.8 51 49.0
C06p02530 Brassica napus HOM05D000176 ORTHO05D003511 3.4e-07 57.8 51 49.0
BolC6t35381H Brassica oleracea HOM05D000176 ORTHO05D003511 3.4e-07 57.8 51 49.0
BraA06t23671Z Brassica rapa HOM05D000176 ORTHO05D003511 3.4e-07 57.8 51 49.0
Carub.0001s3722 Capsella rubella HOM05D000176 ORTHO05D003511 3.4e-07 57.8 51 49.0
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-07 57.8 44 54.5
Sed0014738 Sechium edule HOM05D000176 ORTHO05D000106 3.4e-07 57.8 54 44.4
QL02p103239 Quercus lobata HOM05D000176 ORTHO05D000106 4.4e-07 57.4 50 50.0
QL01p018788 Quercus lobata HOM05D000176 ORTHO05D000106 7.6e-07 56.6 44 54.5
MELO3C022946.2 Cucumis melo HOM05D000176 ORTHO05D000106 9.9e-07 56.2 50 46.0
MELO3C030761.2 Cucumis melo HOM05D000176 ORTHO05D000106 9.9e-07 56.2 34 67.6
Thhalv10011184m.g Eutrema salsugineum HOM05D000176 ORTHO05D003511 9.9e-07 56.2 50 46.0
QL08p031423 Quercus lobata HOM05D000176 ORTHO05D009654 9.9e-07 56.2 42 57.1
Sp1g35090 Schrenkiella parvula HOM05D000176 ORTHO05D003511 9.9e-07 56.2 50 48.0
Aa31LG10G5620 Aethionema arabicum HOM05D000176 ORTHO05D003511 1.3e-06 55.8 50 46.0
CARHR037760 Cardamine hirsuta HOM05D000176 ORTHO05D003511 1.3e-06 55.8 50 46.0
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.3e-06 55.8 44 52.3
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-06 55.8 44 52.3
AL1G54690 Arabidopsis lyrata HOM05D000176 ORTHO05D003511 1.7e-06 55.5 50 48.0
AT1G48120 Arabidopsis thaliana HOM05D000176 ORTHO05D003511 2.2e-06 55.1 50 46.0
QL07p004315 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-06 55.1 44 52.3
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 2.2e-06 55.1 44 52.3
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.9e-06 54.7 44 52.3
MELO3C033541.2 Cucumis melo HOM05D000176 ORTHO05D000106 3.7e-06 54.3 59 45.8
THA.LOC104802612 Tarenaya hassleriana HOM05D000176 ORTHO05D003511 3.7e-06 54.3 50 46.0
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 4.9e-06 53.9 42 52.4
ClCG01G008600 Citrullus lanatus HOM05D000176 ORTHO05D000106 6.4e-06 53.5 46 52.2
Cc03_g15950 Coffea canephora HOM05D000176 ORTHO05D003511 6.4e-06 53.5 50 46.0
Rhsim03G0028500 Rhododendron simsii HOM05D000176 ORTHO05D000106 6.4e-06 53.5 49 51.0
SHI45281 Sapria himalayana HOM05D000176 ORTHO05D000106 6.4e-06 53.5 44 52.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 8.4e-06 53.1 41 53.7


User provided reference genes

Program Settings