Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 1.5e-72 276.2 145 100.0
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 4.4e-53 211.5 146 81.5
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 1.3e-31 140.2 133 65.4
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.8e-23 112.5 149 42.3
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 4.8e-23 111.7 155 45.8
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 1.4e-22 110.2 156 44.9
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 5.3e-22 108.2 149 40.9
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 9.0e-22 107.5 159 44.0
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.3e-20 103.6 138 45.7
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.3e-20 103.6 138 45.7
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 2.2e-20 102.8 169 43.8
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 2.9e-20 102.4 154 39.0
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 3.8e-20 102.1 154 39.6
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 4.9e-20 101.7 148 42.6
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 6.5e-20 101.3 141 39.0
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 8.4e-20 100.9 137 40.1
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 3.2e-19 99.0 137 39.4
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 4.2e-19 98.6 137 39.4
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 9.3e-19 97.4 151 38.4
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.2e-18 97.1 142 42.3
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 2.1e-18 96.3 152 39.5
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 4.6e-18 95.1 153 39.2
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 4.6e-18 95.1 154 42.2
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 1.3e-17 93.6 125 44.8
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 2.3e-17 92.8 123 43.9
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 3.9e-17 92.0 148 38.5
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 6.7e-17 91.3 139 43.9
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 6.7e-17 91.3 139 43.9
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.1e-16 90.5 139 43.9
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 1.1e-16 90.5 147 36.7
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 1.5e-16 90.1 152 40.1
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 1.5e-16 90.1 115 49.6
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 2.5e-16 89.4 121 44.6
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.3e-15 87.0 118 44.9
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 1.6e-15 86.7 116 44.0
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 6.3e-15 84.7 145 40.7
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 8.2e-15 84.3 128 39.8
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.8e-14 83.2 148 40.5
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 2.4e-14 82.8 143 38.5
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 2.4e-14 82.8 150 36.0
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 1.5e-13 80.1 139 39.6
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 4.5e-13 78.6 112 41.1
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.3e-12 77.0 119 38.7
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.7e-12 76.6 143 35.0
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 2.2e-12 76.3 145 36.6
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 2.9e-12 75.9 120 36.7
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 2.9e-12 75.9 147 37.4
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 5.0e-12 75.1 130 38.5
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.0e-12 75.1 152 37.5
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 6.5e-12 74.7 144 36.1
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.1e-11 73.9 139 33.1
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-11 73.9 147 36.7
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 1.1e-11 73.9 120 37.5
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 1.4e-11 73.6 118 39.0
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.4e-11 73.6 114 39.5
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.9e-11 73.2 148 38.5
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 2.5e-11 72.8 149 36.9
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 3.2e-11 72.4 152 36.2
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 7.2e-11 71.2 145 29.7
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 9.4e-11 70.9 146 37.0
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 9.4e-11 70.9 120 37.5
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 1.2e-10 70.5 148 33.8
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.6e-10 70.1 120 34.2
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 2.1e-10 69.7 132 35.6
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 2.1e-10 69.7 123 39.8
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 4.6e-10 68.6 136 30.9
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 6.1e-10 68.2 146 33.6
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 6.1e-10 68.2 136 30.9
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 6.1e-10 68.2 136 30.9
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 7.9e-10 67.8 146 35.6
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 7.9e-10 67.8 146 35.6
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 7.9e-10 67.8 146 35.6
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.4e-09 67.0 134 37.3
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.8e-09 66.6 145 33.8
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 3.0e-09 65.9 134 37.3
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 3.0e-09 65.9 119 31.1
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 3.0e-09 65.9 119 31.1
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 5.1e-09 65.1 121 33.1
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 5.1e-09 65.1 121 33.9
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 5.1e-09 65.1 122 32.8
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 6.7e-09 64.7 121 35.5
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 6.7e-09 64.7 121 35.5
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 8.8e-09 64.3 153 36.6
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 8.8e-09 64.3 121 33.1
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-08 63.9 121 35.5
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 2.0e-08 63.2 114 32.5
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 2.5e-08 62.8 122 36.9
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 2.5e-08 62.8 122 36.9
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 2.5e-08 62.8 119 31.9
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 4.3e-08 62.0 120 34.2
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 7.4e-08 61.2 56 51.8
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.7e-07 60.1 125 30.4
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 1.7e-07 60.1 125 30.4
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 1.4e-06 57.0 114 33.3
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 1.8e-06 56.6 134 32.8
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.3e-06 55.1 122 33.6
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 6.9e-06 54.7 120 33.3


User provided reference genes

Program Settings