Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.6e-158 562.0 285 100.0
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 3.0e-138 495.4 285 89.5
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.1e-135 486.9 265 93.6
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 6.3e-120 434.5 284 80.6
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.8e-107 392.5 283 68.2
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.7e-107 391.7 283 67.8
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 6.1e-107 391.3 242 83.5
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.0e-105 386.3 282 67.7
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.0e-105 386.3 283 70.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.8e-105 384.8 283 67.5
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.9e-104 382.5 285 66.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.4e-104 381.3 284 67.6
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.4e-103 380.2 281 67.6
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 7.0e-103 377.9 284 67.6
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 9.2e-103 377.5 284 66.5
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.2e-102 377.1 281 67.3
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.6e-102 376.7 281 66.5
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.6e-102 375.2 283 66.1
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 7.8e-102 374.4 283 65.7
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.3e-101 373.6 284 65.5
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.3e-101 373.6 282 66.7
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.0e-101 372.5 285 67.0
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.0e-101 372.5 281 65.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 3.0e-101 372.5 284 67.3
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.0e-101 372.5 284 65.8
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 3.9e-101 372.1 284 66.5
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.9e-101 372.1 283 65.4
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 8.6e-101 370.9 284 65.1
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.3e-100 369.0 282 67.0
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 4.3e-100 368.6 283 64.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 7.3e-100 367.9 283 64.3
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 9.5e-100 367.5 283 65.0
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.2e-99 367.1 281 64.4
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.1e-99 366.3 281 62.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 4.7e-99 365.2 283 63.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 6.2e-99 364.8 281 64.1
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 6.2e-99 364.8 280 66.1
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 6.8e-98 361.3 281 64.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.8e-98 361.3 292 65.1
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 8.9e-98 360.9 281 65.1
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 8.9e-98 360.9 287 64.8
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.2e-97 360.5 287 64.5
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 5.8e-97 358.2 283 63.6
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 5.8e-97 358.2 282 62.4
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 7.5e-97 357.8 283 63.6
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 9.8e-97 357.5 282 61.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 9.8e-97 357.5 282 62.1
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.2e-96 356.3 281 62.3
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.9e-96 355.9 294 61.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.4e-95 353.6 281 63.3
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.9e-95 353.2 283 63.6
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.4e-95 352.8 259 68.0
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.2e-95 352.4 273 65.2
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.1e-95 352.1 281 63.0
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 5.4e-95 351.7 283 61.8
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 7.0e-95 351.3 282 61.7
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.2e-94 350.5 281 62.6
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.2e-94 350.5 281 62.6
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.6e-94 350.1 281 63.0
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.5e-94 349.0 284 62.0
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.5e-94 349.0 273 64.5
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.6e-94 348.6 284 62.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.0e-93 347.4 278 63.3
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.0e-93 347.4 278 63.3
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.0e-93 347.4 278 63.3
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.3e-93 346.3 278 63.7
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 5.0e-93 345.1 279 60.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 5.0e-93 345.1 229 73.4
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 5.0e-93 345.1 285 62.5
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 5.0e-93 345.1 280 63.9
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 5.0e-93 345.1 289 63.0
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 8.6e-93 344.4 244 70.9
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.9e-92 343.2 277 63.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-92 343.2 277 63.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.9e-92 343.2 277 63.5
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.5e-92 342.8 283 62.5
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.3e-92 342.4 282 62.4
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 7.3e-92 341.3 284 60.2
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.6e-91 340.1 286 61.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.1e-91 339.7 282 62.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 2.1e-91 339.7 277 62.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.1e-91 339.7 278 62.9
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.6e-91 339.0 277 63.5
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 3.6e-91 339.0 229 72.1
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.7e-91 338.6 278 62.2
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 6.2e-91 338.2 278 61.9
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 8.1e-91 337.8 278 63.7
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 8.1e-91 337.8 229 71.6
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 3.1e-90 335.9 278 63.3
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 3.1e-90 335.9 277 62.8
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.2e-90 335.1 230 72.2
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 6.8e-90 334.7 284 60.9
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 9.9e-89 330.9 286 59.4
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.2e-88 329.7 280 61.8
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 2.2e-88 329.7 281 61.6
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.2e-88 329.7 284 60.6
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.7e-88 328.9 285 58.9
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.9e-88 328.6 290 60.3
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.4e-87 327.0 318 55.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.4e-87 327.0 284 60.9
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 9.2e-87 324.3 291 59.1
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.7e-86 322.8 216 70.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.7e-86 322.8 244 66.8
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 8.6e-85 317.8 254 63.8
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 5.6e-84 315.1 279 59.5
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 5.6e-84 315.1 284 57.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 4.7e-83 312.0 278 58.3
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.4e-82 310.5 252 61.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.4e-82 309.7 281 57.7
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.0e-81 306.6 229 66.8
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 2.6e-81 306.2 275 58.5
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 7.1e-79 298.1 219 66.7
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 9.2e-79 297.7 290 55.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.5e-78 295.8 282 54.6
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.0e-78 295.0 235 63.0
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 3.0e-77 292.7 213 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 9.6e-76 287.7 292 51.7
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.4e-74 283.9 229 60.3
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 6.9e-74 281.6 229 59.8
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 3.0e-69 266.2 239 54.0
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.3e-67 260.8 272 51.1
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.1e-67 260.0 289 46.7
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.4e-60 235.0 210 61.9
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.8e-57 225.3 153 69.9
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.7e-54 216.5 139 74.1
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-53 213.8 197 49.7
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-52 210.7 197 49.2
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.9e-52 210.3 197 48.7
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.5e-52 209.9 265 44.9
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.3e-52 209.1 197 48.7
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-50 204.1 211 56.4
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-49 199.9 224 53.1
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-47 194.5 135 71.1
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 5.7e-44 182.2 251 46.2
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.4e-41 172.9 197 42.6
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-40 170.2 176 55.7
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-38 163.3 180 47.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.2e-27 127.1 83 75.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.8e-27 126.7 119 58.0
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.3e-27 125.6 206 42.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.3e-27 125.6 193 36.3
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 4.1e-26 122.9 76 76.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.5e-25 119.8 99 61.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.5e-25 119.8 99 61.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.9e-25 119.0 220 40.0
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 2.9e-24 116.7 218 33.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.8e-24 116.3 205 33.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.1e-23 114.8 190 38.4
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.0e-18 95.5 59 78.0
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-17 94.0 62 72.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-17 93.6 57 77.2
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 62 71.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.7e-14 83.6 63 68.3
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 5.2e-13 79.3 91 46.2
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-12 76.6 58 65.5
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 2.2e-11 73.9 51 64.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 5.0e-08 62.8 92 39.1
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 2.7e-06 57.0 59 52.5
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 2.7e-06 57.0 59 52.5


User provided reference genes

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