Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.7e-138 494.6 262 100.0
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 5.8e-128 461.1 262 93.9
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.0e-116 422.2 229 96.5
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 7.1e-110 401.0 230 91.7
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 1.4e-94 350.1 229 77.7
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 2.5e-94 349.4 229 77.7
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 1.6e-93 346.7 230 77.8
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.4e-92 343.6 230 76.5
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.9e-92 342.0 236 78.8
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.1e-91 340.5 230 76.1
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.3e-91 339.0 230 75.7
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 7.4e-91 337.8 229 75.1
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 9.7e-91 337.4 244 75.8
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 9.7e-91 337.4 230 77.0
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.7e-90 336.7 230 75.7
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.7e-90 336.7 230 74.8
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.7e-90 336.7 230 73.9
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.7e-90 336.7 230 75.2
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 2.2e-90 336.3 230 75.7
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.8e-90 335.9 230 74.8
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 2.8e-90 335.9 230 74.8
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 4.8e-90 335.1 230 75.7
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 6.3e-90 334.7 230 75.7
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.1e-89 334.0 230 74.3
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.1e-89 334.0 230 73.9
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.4e-89 333.6 230 74.8
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 1.8e-89 333.2 230 74.8
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.1e-89 332.4 230 75.2
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 4.1e-89 332.0 230 75.7
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 9.1e-89 330.9 230 73.5
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 2.0e-88 329.7 230 74.3
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 4.5e-88 328.6 228 74.1
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 5.9e-88 328.2 230 74.8
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.0e-87 327.4 230 73.0
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 1.7e-87 326.6 230 73.0
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.7e-87 326.6 229 73.8
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.8e-87 325.5 230 73.0
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 6.5e-87 324.7 230 71.7
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 6.5e-87 324.7 230 72.2
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.4e-86 323.6 238 69.7
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 2.5e-86 322.8 230 70.9
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 3.2e-86 322.4 230 72.6
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 5.5e-86 321.6 230 71.7
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.2e-85 320.5 230 72.2
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.2e-85 320.5 230 71.3
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.1e-85 319.7 230 72.2
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 2.1e-85 319.7 230 70.9
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 2.7e-85 319.3 230 70.4
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.7e-85 319.3 229 72.5
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 3.9e-84 315.5 249 67.5
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 3.9e-84 315.5 237 69.2
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.1e-83 313.9 230 70.0
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 2.0e-83 313.2 232 69.8
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 2.0e-83 313.2 263 64.6
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 4.4e-83 312.0 232 69.4
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 4.4e-83 312.0 230 69.6
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.4e-83 312.0 230 74.8
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.4e-83 312.0 252 65.5
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 4.4e-83 312.0 220 72.3
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.3e-82 310.5 229 70.7
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 1.3e-82 310.5 230 70.9
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 1.3e-82 310.5 230 68.7
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.7e-82 310.1 230 70.9
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.2e-82 309.7 230 70.9
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.2e-82 309.7 230 69.6
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.8e-82 309.3 230 68.3
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.1e-81 307.4 229 68.6
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.1e-81 307.4 230 68.7
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.8e-81 306.6 232 71.1
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 3.1e-81 305.8 230 68.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.2e-80 303.9 230 68.7
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 3.5e-80 302.4 232 68.5
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 7.7e-80 301.2 229 65.9
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.7e-79 300.1 229 65.5
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 2.2e-79 299.7 229 65.1
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 2.2e-79 299.7 232 67.7
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 3.8e-79 298.9 229 65.5
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 3.8e-79 298.9 229 65.5
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 5.0e-79 298.5 229 65.5
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 6.5e-79 298.1 229 65.1
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 6.5e-79 298.1 231 68.4
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 6.5e-79 298.1 230 67.8
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 8.5e-79 297.7 230 67.0
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.4e-78 297.0 229 65.1
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 1.4e-78 297.0 229 65.1
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.9e-78 296.6 232 65.9
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 2.5e-78 296.2 230 67.4
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 7.2e-78 294.7 230 66.5
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 7.2e-78 294.7 233 66.1
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 9.4e-78 294.3 231 68.4
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.2e-77 293.9 229 64.6
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.2e-77 293.9 229 64.6
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 2.7e-77 292.7 229 65.1
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 4.7e-77 292.0 220 69.1
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 6.1e-77 291.6 254 63.0
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.0e-76 290.8 230 67.8
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 3.0e-76 289.3 229 67.2
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 5.2e-76 288.5 235 63.4
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 6.7e-76 288.1 229 64.2
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 1.1e-75 287.3 307 55.7
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 9.7e-75 284.3 229 62.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.7e-74 283.5 229 65.9
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 2.2e-74 283.1 229 62.4
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 9.1e-73 277.7 229 61.6
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.5e-70 270.4 360 47.2
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 4.4e-67 258.8 214 62.6
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 9.7e-67 257.7 181 75.7
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.6e-64 250.4 318 49.4
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 7.7e-64 248.1 201 62.7
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.0e-60 237.7 179 70.4
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 6.8e-60 235.0 166 71.7
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.7e-58 230.3 230 52.6
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.8e-58 229.6 164 72.6
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 2.8e-58 229.6 164 72.6
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.7e-56 223.0 140 79.3
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 7.7e-56 221.5 231 54.5
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.1e-54 217.6 164 68.9
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 2.5e-54 216.5 229 51.5
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 3.3e-54 216.1 141 75.2
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 6.1e-53 211.8 228 54.8
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 5.2e-52 208.8 303 43.6
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.4e-49 199.9 147 69.4
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 8.6e-47 191.4 138 65.2
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 5.6e-46 188.7 233 45.9
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.6e-43 179.9 117 75.2
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 4.9e-42 175.6 111 75.7
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 8.3e-42 174.9 175 53.7
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 5.4e-41 172.2 217 49.8
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.6e-40 170.6 241 45.2
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.3e-39 166.8 139 64.7
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 4.3e-38 162.5 138 60.1
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 7.3e-38 161.8 245 42.0
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 3.6e-37 159.5 266 40.6
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.9e-34 149.8 116 65.5
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 3.2e-33 146.4 152 50.7
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.2e-32 144.4 291 35.7
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 4.0e-28 129.4 126 57.1
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.5e-27 127.5 92 65.2
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.4e-25 120.9 111 58.6
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.6e-21 107.5 72 70.8
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 8.9e-20 101.7 71 66.2
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 4.9e-18 95.9 123 49.6
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 6.4e-18 95.5 102 54.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 6.4e-18 95.5 80 65.0
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.4e-17 94.4 67 71.6
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.7e-15 87.4 58 72.4
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 3.9e-15 86.3 63 63.5
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.3e-14 82.0 54 75.9
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 2.8e-13 80.1 68 58.8
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.8e-13 80.1 125 41.6
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 1.4e-12 77.8 117 42.7
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.0e-11 73.9 83 53.0
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.2e-09 66.6 38 76.3
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 4.2e-09 66.2 91 42.9
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 2.1e-08 63.9 61 49.2
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 2.3e-07 60.5 41 65.9
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 3.3e-06 56.6 45 64.4
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 4.3e-06 56.2 40 67.5


User provided reference genes

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