Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 6.7e-204 713.8 355 100.0
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 1.6e-200 702.6 355 98.6
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.2e-187 659.8 355 92.1
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.2e-176 623.2 355 85.9
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 3.2e-145 518.8 355 71.5
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 3.5e-144 515.4 355 70.7
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.5e-142 510.0 355 70.1
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.1e-140 502.3 355 68.7
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.1e-140 502.3 355 69.0
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 5.3e-140 501.5 355 70.7
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 3.4e-139 498.8 355 67.3
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 7.6e-139 497.7 355 69.9
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 1.3e-138 496.9 354 68.4
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 4.2e-137 491.9 354 67.8
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 5.4e-137 491.5 356 66.6
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.5e-136 488.8 356 66.3
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 3.5e-136 488.8 356 66.3
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.5e-136 488.8 355 65.1
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 1.0e-135 487.3 355 65.4
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.6e-133 478.8 328 71.0
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 6.2e-133 478.0 355 63.9
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.1e-132 477.2 343 68.8
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 7.6e-131 471.1 355 66.5
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 8.4e-130 467.6 356 64.0
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.1e-129 467.2 348 64.4
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 2.1e-128 463.0 355 62.8
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 2.7e-128 462.6 348 64.7
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 7.9e-128 461.1 348 63.8
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.3e-127 460.3 348 63.5
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.1e-126 457.2 345 64.3
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.5e-126 456.8 333 66.4
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 4.3e-126 455.3 356 63.8
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 4.3e-126 455.3 355 62.8
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 8.1e-125 451.1 355 61.4
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 1.8e-124 449.9 363 59.5
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 2.4e-124 449.5 299 72.6
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 7.6e-123 444.5 333 64.3
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 8.4e-122 441.0 337 66.2
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.4e-121 440.3 334 63.5
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 1.9e-121 439.9 340 64.1
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 2.5e-121 439.5 354 59.6
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 5.5e-121 438.3 334 62.9
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 9.3e-121 437.6 355 60.3
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.2e-120 437.2 314 65.3
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 1.2e-120 437.2 318 65.7
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.3e-119 433.7 354 58.5
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 1.8e-119 433.3 355 59.4
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 3.9e-119 432.2 355 59.2
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 5.1e-119 431.8 344 61.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.1e-118 430.6 287 73.2
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 1.5e-118 430.3 355 59.7
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 3.3e-118 429.1 336 61.9
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 7.4e-118 427.9 316 64.6
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 2.8e-117 426.0 355 58.0
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 6.2e-117 424.9 355 57.2
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 8.2e-117 424.5 352 59.7
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 5.3e-116 421.8 346 57.8
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 2.6e-115 419.5 355 57.7
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 3.4e-115 419.1 318 64.5
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 3.4e-115 419.1 355 57.7
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 2.2e-114 416.4 313 63.9
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 3.8e-114 415.6 338 59.8
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 1.1e-113 414.1 355 57.5
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.4e-113 413.7 355 57.5
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 2.5e-113 412.9 335 59.7
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 7.1e-113 411.4 355 57.2
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.6e-112 410.2 355 56.6
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.7e-112 409.5 328 63.7
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 4.6e-112 408.7 355 56.1
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 3.0e-111 406.0 352 56.5
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 6.7e-111 404.8 355 55.2
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 8.7e-111 404.4 346 57.2
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 3.3e-110 402.5 404 54.5
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 9.7e-110 401.0 352 58.8
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 6.3e-109 398.3 354 57.3
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.4e-108 397.1 355 57.5
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.8e-108 396.7 355 57.5
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.5e-107 393.7 333 57.1
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 3.8e-106 389.0 327 59.6
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 5.5e-105 385.2 246 74.0
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.2e-104 384.0 347 55.0
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 4.6e-104 382.1 355 55.8
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.4e-103 380.6 355 52.7
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 1.7e-101 373.6 355 52.1
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 3.7e-101 372.5 355 52.7
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 2.4e-100 369.8 355 54.1
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 3.1e-100 369.4 246 71.5
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 9.1e-100 367.9 355 53.2
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.5e-94 350.5 352 51.1
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.7e-93 347.1 348 54.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 2.4e-92 343.2 232 70.7
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 1.5e-89 334.0 355 50.7
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.5e-89 334.0 340 49.1
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 7.4e-86 321.6 225 68.9
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 9.7e-86 321.2 333 48.9
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 6.3e-85 318.5 354 47.2
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 8.5e-82 308.1 299 51.8
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 1.9e-81 307.0 291 54.0
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 7.2e-81 305.1 303 52.1
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 8.0e-80 301.6 248 61.3
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.3e-79 300.1 344 49.4
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.5e-73 280.8 205 67.3
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 3.9e-58 229.6 182 61.0
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 8.1e-48 195.3 175 57.1
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 8.6e-42 175.3 344 31.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.9e-41 174.1 232 43.5
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 3.6e-40 169.9 221 41.6
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 8.6e-34 148.7 167 47.9
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.5e-33 147.9 354 29.7
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 5.8e-22 109.4 258 31.0
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.8e-16 90.5 253 30.0
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 5.3e-15 86.3 170 34.1
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 6.9e-15 85.9 199 33.2
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 2.9e-13 80.5 141 39.0
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 1.4e-12 78.2 192 32.8
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.4e-12 77.4 187 33.2
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 9.3e-12 75.5 182 34.1
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 1.6e-11 74.7 219 29.7
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.7e-11 73.9 197 29.4
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 2.7e-11 73.9 191 31.9
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 4.6e-11 73.2 185 33.5
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 4.6e-11 73.2 197 32.0
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 6.0e-11 72.8 193 31.6
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 6.0e-11 72.8 193 31.6
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 6.0e-11 72.8 261 28.4
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 7.9e-11 72.4 195 29.7
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.0e-10 72.0 185 33.0
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.3e-10 71.6 201 28.9
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.8e-10 71.2 179 30.7
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 3.0e-10 70.5 158 35.4
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.5e-09 68.2 196 28.6
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.5e-09 68.2 196 28.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.9e-09 67.8 180 31.7
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 3.3e-09 67.0 162 32.1
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 3.3e-09 67.0 194 30.9
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 5.6e-09 66.2 197 28.4
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 7.4e-09 65.9 191 31.4
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 7.4e-09 65.9 195 27.7
Medtr3g033040 Medicago truncatula HOM05D001779 ORTHO05D001753 6.2e-08 62.8 114 33.3
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 1.4e-07 61.6 164 31.7
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 3.1e-07 60.5 153 30.7
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 4.0e-07 60.1 47 53.2
Psat5g209840 Pisum sativum HOM05D001779 ORTHO05D001753 6.9e-07 59.3 114 31.6
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 9.0e-07 58.9 100 37.0
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 9.0e-07 58.9 100 37.0
Ah.05g179750 Amaranthus hybridus HOM05D000001 ORTHO05D000003 1.5e-06 58.2 291 20.6
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 1.5e-06 58.2 112 33.9
CBR_g10841 Chara braunii HOM05D001779 ORTHO05D001753 2.0e-06 57.8 108 26.9
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 3.4e-06 57.0 114 32.5
vmacro00256 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 4.5e-06 56.6 120 34.2
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 5.8e-06 56.2 112 31.2
Sopen08g013850 Solanum pennellii HOM05D001779 ORTHO05D001753 7.6e-06 55.8 97 35.1
Lj3g0021087 Lotus japonicus HOM05D001779 ORTHO05D001753 1.0e-05 55.5 148 27.7


User provided reference genes

Program Settings