Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 2.6e-92 342.0 174 100.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.8e-83 311.6 174 92.0
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 4.9e-83 311.2 174 90.2
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 3.5e-81 305.1 174 88.5
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.6e-78 296.2 174 84.5
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 8.2e-78 293.9 174 83.9
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 2.4e-77 292.4 174 83.9
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 3.1e-77 292.0 174 83.3
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 5.3e-77 291.2 174 82.8
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 6.9e-77 290.8 174 83.3
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 9.0e-77 290.4 174 82.8
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.6e-76 288.9 174 82.2
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 79.3
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 79.3
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 79.9
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 8.4e-75 283.9 174 80.5
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.5e-74 282.3 174 79.9
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 79.3
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 78.7
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 79.9
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 5.5e-74 281.2 174 80.5
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 78.2
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 78.2
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 78.2
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 1.2e-73 280.0 174 77.6
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 79.9
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 79.9
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 78.2
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 77.6
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 77.0
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 79.9
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 78.2
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 76.4
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 78.2
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.1e-71 273.5 194 73.2
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 78.2
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 7.4e-71 270.8 174 76.4
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 75.3
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 77.0
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 74.7
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.9
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 74.1
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 75.3
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 75.9
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.1
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.1
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.1
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.1
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 74.1
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 75.9
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 77.0
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 75.9
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 75.9
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 73.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.0e-68 262.7 175 74.9
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 2.6e-68 262.3 175 72.0
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 74.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.0
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 2.2e-67 259.2 198 69.2
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 73.6
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 72.4
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 74.1
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 71.8
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 73.6
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 73.6
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 74.1
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 72.4
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 73.0
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 71.3
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 2.7e-65 252.3 147 88.4
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 2.7e-65 252.3 171 73.1
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 70.1
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 3.6e-65 251.9 158 77.8
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 4.6e-65 251.5 173 69.9
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.0e-64 250.4 164 75.0
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.8e-64 249.6 174 70.7
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 6.7e-64 247.7 164 72.6
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 69.0
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 70.1
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 8.7e-64 247.3 174 73.6
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 71.8
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 2.5e-63 245.7 164 72.0
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.5e-63 245.7 174 69.0
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 4.3e-63 245.0 143 82.5
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 71.3
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 69.5
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 3.1e-61 238.8 173 69.4
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.2e-60 236.9 174 69.0
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 3.4e-60 235.3 169 68.0
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.0e-59 233.8 174 67.8
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 2.2e-59 232.6 175 68.6
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 2.9e-59 232.3 146 78.1
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 1.4e-58 229.9 174 66.7
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 67.2
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 67.2
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.5e-58 229.2 151 70.9
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 2.5e-58 229.2 174 66.7
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 7.2e-58 227.6 174 67.8
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.1e-57 226.1 156 69.2
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 7.9e-57 224.2 174 66.7
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 3.9e-56 221.9 174 64.9
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 5.1e-56 221.5 174 65.5
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 2.0e-55 219.5 174 64.9
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.8e-53 213.0 174 61.5
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.4e-53 212.6 174 60.9
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 3.4e-52 208.8 122 77.9
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 7.7e-52 207.6 122 80.3
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.3e-51 206.8 174 61.5
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 2.2e-51 206.1 176 63.1
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 8.5e-51 204.1 174 60.9
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 5.5e-50 201.4 174 59.8
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.1e-49 199.5 172 58.1
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.7e-49 199.1 172 58.1
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 3.6e-49 198.7 196 55.1
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.2e-48 194.9 122 73.0
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 1.1e-47 193.7 171 55.0
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 2.2e-46 189.5 175 57.1
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 3.1e-45 185.7 182 57.1
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.0e-44 183.0 239 45.2
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 5.9e-44 181.4 176 54.5
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 7.7e-44 181.0 174 54.0
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 4.7e-41 171.8 95 83.2
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 1.8e-40 169.9 173 54.3
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 4.8e-38 161.8 173 46.2
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.8e-37 159.8 94 78.7
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 5.3e-37 158.3 94 77.7
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.2e-36 157.1 93 76.3
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 1.7e-27 126.7 85 65.9
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.3e-26 122.5 96 55.2
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 3.0e-24 115.9 127 54.3
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 3.4e-23 112.5 75 65.3
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 2.8e-22 109.4 67 73.1
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 4.9e-22 108.6 168 36.9
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 9.2e-21 104.4 55 87.3
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-19 100.9 53 88.7
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.6e-17 93.6 48 91.7
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 1.0e-16 90.9 85 56.5
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 5.2e-16 88.6 178 29.2
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.4e-13 79.7 38 92.1
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 5.4e-13 78.6 173 32.4
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.8e-09 66.2 93 43.0
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.5e-07 58.2 28 85.7
MELO3C029515.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.7e-06 55.8 28 89.3
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 8.3e-06 54.7 166 30.7


User provided reference genes

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