Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 1.2e-172 609.8 312 100.0
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 1.6e-103 380.2 290 73.4
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 1.2e-76 290.8 290 59.3
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 3.1e-59 233.0 304 47.4
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 4.0e-59 232.6 279 49.8
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 2.9e-57 226.5 302 48.0
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 3.5e-55 219.5 283 48.4
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 7.3e-53 211.8 291 44.7
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 6.8e-51 205.3 280 45.4
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 8.9e-51 204.9 278 46.0
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 8.9e-51 204.9 276 48.9
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 2.0e-50 203.8 306 43.1
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 2.6e-50 203.4 290 45.2
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 2.2e-49 200.3 291 43.3
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 2.2e-49 200.3 291 43.3
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.2e-49 200.3 283 45.2
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 1.4e-48 197.6 300 43.3
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 1.4e-48 197.6 289 44.3
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.4e-48 196.8 298 42.6
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 5.4e-48 195.7 297 41.1
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 1.2e-47 194.5 289 43.9
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 1.6e-47 194.1 300 43.7
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 1.6e-47 194.1 278 43.5
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 2.7e-47 193.4 288 43.1
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 3.5e-47 193.0 290 40.7
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 1.3e-46 191.0 290 42.8
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 8.6e-46 188.3 278 42.8
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.5e-45 186.8 280 43.2
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.5e-45 186.8 280 43.2
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 2.5e-45 186.8 271 44.3
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 3.3e-45 186.4 282 43.6
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 3.3e-45 186.4 277 43.0
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 5.6e-45 185.7 275 44.4
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.1e-43 181.4 297 40.4
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 1.4e-43 181.0 279 40.5
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 1.4e-43 181.0 278 42.8
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 4.0e-43 179.5 274 42.0
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 4.0e-43 179.5 294 41.2
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 5.2e-43 179.1 319 39.8
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 5.2e-43 179.1 291 41.6
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 6.9e-43 178.7 314 39.8
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 1.5e-42 177.6 274 43.4
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 2.0e-42 177.2 282 41.1
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 4.4e-42 176.0 289 42.9
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 5.8e-42 175.6 278 41.0
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 2.2e-41 173.7 298 39.3
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 2.9e-41 173.3 284 39.8
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 4.9e-41 172.6 287 38.7
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 5.4e-40 169.1 354 35.9
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 1.2e-39 167.9 284 41.2
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 2.7e-39 166.8 285 39.3
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 1.5e-37 161.0 246 41.1
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 4.3e-37 159.5 315 36.5
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 1.3e-36 157.9 317 36.0
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.6e-36 157.5 314 37.6
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 6.2e-36 155.6 264 40.5
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 2.4e-35 153.7 276 38.0
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 1.2e-34 151.4 289 37.7
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 3.4e-34 149.8 292 36.6
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 3.4e-34 149.8 233 42.5
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 2.2e-33 147.1 282 36.2
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 2.9e-33 146.7 275 38.9
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 3.8e-33 146.4 276 37.0
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 3.8e-33 146.4 285 38.9
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 2.4e-32 143.7 274 38.7
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 2.4e-32 143.7 274 38.7
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 1.6e-31 141.0 293 34.1
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 2.1e-31 140.6 330 33.0
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 2.3e-30 137.1 180 46.1
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 5.1e-30 136.0 289 34.6
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 1.5e-29 134.4 203 39.9
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 2.5e-29 133.7 236 36.9
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.8e-28 130.2 232 38.8
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 6.2e-28 129.0 303 35.0
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 6.2e-28 129.0 281 36.3
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 1.4e-27 127.9 302 33.4
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.2e-26 124.8 161 50.3
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 1.2e-26 124.8 270 34.1
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 2.0e-26 124.0 255 35.7
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 2.6e-26 123.6 302 32.8
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 1.7e-25 120.9 291 35.1
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 1.9e-24 117.5 275 34.2
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 1.9e-24 117.5 178 43.3
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 4.2e-24 116.3 311 31.8
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 5.5e-24 115.9 226 36.7
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 1.6e-23 114.4 303 33.7
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 2.7e-23 113.6 278 32.4
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 7.9e-23 112.1 291 32.0
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 1.8e-22 110.9 274 33.2
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 3.0e-22 110.2 283 30.4
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 2.5e-21 107.1 197 38.1
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 9.6e-21 105.1 205 35.6
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 2.1e-20 104.0 187 37.4
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 4.8e-20 102.8 354 28.8
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 5.1e-14 82.8 146 37.0
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 2.5e-13 80.5 184 36.4
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 6.3e-12 75.9 170 33.5
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 1.2e-10 71.6 83 42.2
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 5.9e-10 69.3 83 41.0
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 2.7e-07 60.5 135 33.3
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 4.6e-07 59.7 80 43.8


User provided reference genes

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