Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.4e-114 416.4 216 100.0
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 5.9e-102 374.4 234 85.5
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 4.8e-96 354.8 216 84.3
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 2.3e-66 256.1 215 65.6
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 1.1e-36 157.5 220 45.0
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 2.0e-33 146.7 221 43.9
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 2.2e-32 143.3 219 43.4
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 2.7e-30 136.3 222 42.8
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 1.0e-29 134.4 221 41.2
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 1.3e-29 134.0 222 41.9
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 1.8e-29 133.7 219 41.6
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 1.8e-29 133.7 221 40.3
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 5.1e-29 132.1 222 41.9
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 1.5e-28 130.6 220 44.1
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 1.7e-24 117.1 227 41.4
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 2.2e-24 116.7 214 39.3
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.2e-23 112.8 219 40.2
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 3.2e-23 112.8 216 37.5
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 1.2e-22 110.9 217 39.6
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 2.1e-22 110.2 219 39.7
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 2.7e-22 109.8 209 39.7
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 1.0e-21 107.8 218 39.0
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 3.3e-20 102.8 220 37.7
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 5.6e-20 102.1 223 35.4
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 1.3e-19 100.9 211 37.4
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 2.1e-19 100.1 211 37.4
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 3.7e-19 99.4 221 37.1
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 1.4e-18 97.4 219 35.6
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.4e-18 97.4 222 38.3
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.4e-18 97.4 217 35.0
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 3.1e-18 96.3 212 34.4
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 4.0e-18 95.9 221 36.7
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 9.0e-18 94.7 218 35.8
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 9.0e-18 94.7 218 35.8
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 2.6e-17 93.2 222 35.1
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 3.4e-17 92.8 246 33.3
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 4.5e-17 92.4 260 32.7
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 7.6e-17 91.7 262 32.1
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 2.9e-16 89.7 238 35.3
Duzib168G1894 Durio zibethinus HOM05D003759 ORTHO05D004149 4.9e-16 89.0 212 34.0
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 4.9e-16 89.0 260 32.7
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 8.4e-16 88.2 221 35.7
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.1e-15 87.8 81 56.8
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 1.4e-15 87.4 218 34.4
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.9e-15 87.0 259 31.7
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 1.9e-15 87.0 285 30.2
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 2.5e-15 86.7 216 33.8
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 3.2e-15 86.3 107 49.5
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 3.2e-15 86.3 107 49.5
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 4.2e-15 85.9 224 37.5
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 7.1e-15 85.1 220 34.1
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 7.1e-15 85.1 231 36.8
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 9.3e-15 84.7 217 34.6
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 9.3e-15 84.7 261 33.3
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 1.2e-14 84.3 218 34.4
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 2.7e-14 83.2 219 34.2
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 3.5e-14 82.8 218 34.4
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 3.5e-14 82.8 218 34.4
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 4.6e-14 82.4 241 31.5
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 4.6e-14 82.4 241 30.7
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 7.9e-14 81.6 222 34.2
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 7.9e-14 81.6 255 31.8
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 7.9e-14 81.6 242 30.6
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 7.9e-14 81.6 220 32.3
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.0e-13 81.3 218 33.0
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 1.8e-13 80.5 219 32.0
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.8e-13 80.5 209 34.0
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.8e-13 80.5 210 33.3
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.8e-13 80.5 220 33.2
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.8e-13 80.5 220 33.2
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.8e-13 80.5 258 31.8
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 3.9e-13 79.3 249 29.3
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 5.1e-13 79.0 208 33.7
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 8.7e-13 78.2 260 29.2
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 1.1e-12 77.8 221 37.1
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.1e-12 77.8 254 31.5
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.5e-12 77.4 213 33.3
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 1.9e-12 77.0 217 34.6
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 3.3e-12 76.3 238 31.9
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 3.3e-12 76.3 285 28.8
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 5.7e-12 75.5 218 34.4
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 9.6e-12 74.7 210 34.3
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.6e-11 73.9 221 34.8
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.1e-11 73.6 253 29.2
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 2.8e-11 73.2 227 33.9
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 2.8e-11 73.2 261 31.0
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 2.8e-11 73.2 208 32.7
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 3.7e-11 72.8 259 29.7
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 4.8e-11 72.4 220 32.3
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 6.3e-11 72.0 211 31.8
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.1e-10 71.2 217 31.3
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 3.1e-10 69.7 224 34.4
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 5.3e-10 68.9 227 32.2
CsaV3_1G029050 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.2e-09 67.8 119 39.5
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.2e-09 67.8 216 30.1
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 1.5e-09 67.4 256 28.1
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 2.0e-09 67.0 264 28.4
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 2.0e-09 67.0 212 31.1
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 3.4e-09 66.2 229 32.3
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 4.5e-09 65.9 209 31.1
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 4.5e-09 65.9 76 51.3
HanXRQChr16g0511321 Helianthus annuus HOM05D003759 ORTHO05D004149 5.9e-09 65.5 121 43.8
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 1.0e-08 64.7 262 28.6
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 1.7e-08 63.9 253 30.0
Dinv41365 Davidia involucrata HOM05D003759 ORTHO05D004149 2.2e-08 63.5 72 55.6
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 2.9e-08 63.2 221 32.6
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 5.0e-08 62.4 264 27.7
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 5.0e-08 62.4 213 31.0
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 5.0e-08 62.4 245 28.6
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.9e-07 60.5 149 35.6
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 2.5e-07 60.1 219 29.7
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 3.2e-07 59.7 145 36.6
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 3.2e-07 59.7 263 28.5
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 3.2e-07 59.7 85 36.5
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 4.2e-07 59.3 223 31.8
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 4.2e-07 59.3 218 31.2
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 4.2e-07 59.3 217 30.0
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.2e-07 59.3 296 26.7
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.2e-07 59.3 296 26.7
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 4.2e-07 59.3 217 29.5
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 5.5e-07 58.9 218 30.3
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 7.2e-07 58.5 213 31.9
Nn8g39944 Nelumbo nucifera HOM05D003759 ORTHO05D004149 7.2e-07 58.5 73 45.2
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 1.2e-06 57.8 133 33.8
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 1.6e-06 57.4 213 28.6
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 1.6e-06 57.4 200 29.0
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 1.6e-06 57.4 217 31.3
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 2.1e-06 57.0 200 28.5
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 2.1e-06 57.0 215 29.8
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 2.1e-06 57.0 216 29.6
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 2.1e-06 57.0 216 29.6
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 3.6e-06 56.2 216 29.6
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 3.6e-06 56.2 223 31.4
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 3.6e-06 56.2 201 29.9
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 3.6e-06 56.2 65 49.2
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 4.6e-06 55.8 213 31.9
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 4.6e-06 55.8 201 29.9
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 6.1e-06 55.5 201 28.9
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 6.1e-06 55.5 65 52.3
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 7.9e-06 55.1 261 25.3


User provided reference genes

Program Settings