Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.3e-85 320.1 219 100.0
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.4e-74 282.7 219 91.3
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.2e-62 243.8 215 86.5
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.2e-62 243.8 215 86.5
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 2.0e-49 199.9 219 63.5
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 1.9e-47 193.4 218 64.2
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 5.5e-47 191.8 206 53.9
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 7.2e-47 191.4 216 52.8
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.2e-46 190.7 209 52.6
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.6e-46 190.3 216 55.1
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 6.1e-46 188.3 209 50.7
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.8e-45 186.8 219 54.8
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.9e-45 185.7 218 53.7
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 6.7e-45 184.9 214 50.5
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 8.8e-45 184.5 218 49.1
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.0e-44 183.3 214 50.0
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.0e-44 183.3 233 48.9
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.6e-44 183.0 224 50.4
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 4.4e-44 182.2 209 54.5
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.7e-44 181.8 166 63.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 7.4e-44 181.4 189 66.7
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.3e-43 180.6 216 58.3
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.7e-43 180.3 194 53.1
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 1.7e-43 180.3 205 57.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.2e-43 179.9 219 53.9
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.8e-43 179.5 208 50.5
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 3.7e-43 179.1 218 47.7
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 4.8e-43 178.7 192 49.5
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 6.3e-43 178.3 178 54.5
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.8e-42 176.8 160 66.2
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.8e-42 176.8 205 63.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 3.1e-42 176.0 223 47.5
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 4.1e-42 175.6 162 80.2
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 6.9e-42 174.9 164 73.2
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 9.1e-42 174.5 179 58.7
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.5e-41 173.7 169 72.2
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.0e-41 173.3 214 68.2
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 2.0e-41 173.3 218 51.4
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.4e-41 172.6 186 57.5
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 5.9e-41 171.8 174 59.2
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 5.9e-41 171.8 159 54.7
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 5.9e-41 171.8 220 48.6
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 7.7e-41 171.4 197 49.7
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 7.7e-41 171.4 189 62.4
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.7e-40 170.2 167 55.1
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.9e-40 169.5 206 66.0
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.9e-39 166.8 178 60.7
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.5e-39 166.4 177 51.4
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 7.2e-39 164.9 198 56.6
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 7.2e-39 164.9 163 63.2
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 9.4e-39 164.5 155 52.9
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.2e-38 164.1 159 62.3
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 2.1e-38 163.3 198 57.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.1e-38 163.3 155 54.2
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 2.1e-38 163.3 232 50.4
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 2.7e-38 162.9 184 48.9
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.7e-38 162.9 165 68.5
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.7e-38 162.9 216 53.2
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 4.7e-38 162.2 162 55.6
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 4.7e-38 162.2 203 54.7
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 4.7e-38 162.2 203 49.8
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 1.0e-37 161.0 171 55.6
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.0e-37 161.0 166 72.3
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.0e-37 161.0 166 72.3
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.0e-37 161.0 163 58.9
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.4e-37 160.6 177 51.4
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.8e-37 160.2 178 70.2
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.8e-37 160.2 178 70.2
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.8e-37 160.2 157 68.8
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 3.0e-37 159.5 178 70.2
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 3.9e-37 159.1 177 66.1
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.2e-37 158.7 166 72.3
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 8.8e-37 157.9 163 49.7
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 8.8e-37 157.9 216 59.7
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 8.8e-37 157.9 216 59.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 8.8e-37 157.9 159 52.2
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 8.8e-37 157.9 229 52.0
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 8.8e-37 157.9 166 51.8
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 1.1e-36 157.5 181 70.2
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.5e-36 157.1 175 57.1
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 2.6e-36 156.4 166 57.2
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 3.3e-36 156.0 233 43.3
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.3e-36 156.0 160 71.2
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.3e-36 156.0 160 71.2
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.3e-36 156.0 160 71.2
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.4e-36 155.6 159 59.1
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 4.4e-36 155.6 166 71.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.4e-36 155.6 166 71.7
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.4e-36 155.6 205 41.5
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.7e-36 155.2 160 71.2
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.3e-35 154.1 168 60.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.3e-35 154.1 208 44.7
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.3e-35 154.1 153 53.6
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.7e-35 153.7 178 68.5
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.7e-35 153.7 191 59.7
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 2.2e-35 153.3 205 56.1
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 2.2e-35 153.3 163 73.0
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.2e-35 153.3 153 71.2
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.8e-35 152.9 208 58.2
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.7e-35 152.5 187 54.0
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 6.3e-35 151.8 168 58.9
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 8.2e-35 151.4 169 65.7
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 8.2e-35 151.4 176 54.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.1e-34 151.0 209 65.1
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.4e-34 150.6 177 62.7
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.1e-34 149.1 157 49.0
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 9.1e-34 147.9 163 72.4
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 9.1e-34 147.9 199 42.2
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 2.0e-33 146.7 150 50.7
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.6e-33 146.4 186 52.7
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 2.6e-33 146.4 154 59.7
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 5.9e-33 145.2 154 50.0
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.0e-32 144.4 178 66.3
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.0e-32 144.4 207 56.0
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.0e-32 144.4 155 51.0
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.0e-32 144.4 216 56.5
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 3.8e-32 142.5 180 45.0
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 5.0e-32 142.1 200 59.0
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 8.5e-32 141.4 250 37.6
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.5e-31 140.6 158 67.1
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.5e-31 139.8 212 55.7
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 5.5e-31 138.7 221 57.9
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.7e-30 136.3 159 46.5
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.0e-29 134.4 171 64.9
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.4e-29 134.0 208 56.2
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.4e-29 134.0 207 41.1
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 8.8e-29 131.3 161 46.6
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 9.7e-28 127.9 113 61.1
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 2.8e-27 126.3 153 60.1
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 6.3e-27 125.2 152 42.8
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.1e-26 124.4 154 62.3
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.1e-26 124.4 154 62.3
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.1e-26 124.4 164 43.3
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.0e-24 117.9 152 40.8
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.6e-22 110.5 162 38.9
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.6e-22 110.5 162 38.9
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 4.7e-22 109.0 178 37.1
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.4e-21 107.5 153 39.2
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.8e-21 107.1 172 34.9
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 8.8e-21 104.8 178 39.9
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 8.8e-21 104.8 120 70.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.0e-20 103.6 156 37.2
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 1.7e-19 100.5 162 45.1
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 6.3e-19 98.6 215 38.1
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 4.1e-18 95.9 117 46.2
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 4.5e-17 92.4 155 40.6
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 5.9e-17 92.0 168 40.5
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.7e-16 90.5 183 30.6
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 5.0e-16 89.0 154 41.6
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.1e-15 87.8 157 38.9
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 4.2e-15 85.9 157 37.6
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 4.2e-15 85.9 157 37.6
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 4.2e-15 85.9 157 37.6
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.2e-14 84.3 163 37.4
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 2.1e-14 83.6 163 35.6
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.2e-13 79.0 163 35.0
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 8.8e-13 78.2 170 29.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 3.7e-11 72.8 159 32.7
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.2e-09 67.8 110 44.5
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.3e-08 63.5 159 32.7
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.5e-07 60.1 32 81.2
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 4.7e-06 55.8 35 77.1


User provided reference genes

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