Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 3.2e-130 468.4 229 100.0
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 3.0e-120 435.3 229 93.4
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.1e-111 406.8 229 87.3
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 8.1e-110 400.6 229 84.3
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 3.2e-98 362.1 227 76.2
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 4.2e-98 361.7 227 76.7
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.2e-97 360.1 226 76.5
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 3.9e-96 355.1 227 75.3
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 6.7e-96 354.4 227 75.3
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 7.4e-95 350.9 227 72.2
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 7.4e-95 350.9 228 73.2
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 9.7e-95 350.5 227 72.2
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 2.8e-94 349.0 223 75.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 6.3e-94 347.8 227 72.7
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.1e-93 347.1 227 73.1
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.8e-93 346.3 222 72.5
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.8e-93 346.3 223 71.7
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.4e-93 345.9 222 72.1
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 4.1e-93 345.1 222 73.4
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 9.0e-93 344.0 227 74.0
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 9.0e-93 344.0 222 73.0
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.2e-92 343.6 222 71.6
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-92 343.6 227 72.7
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-92 343.2 222 73.9
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 2.0e-92 342.8 222 71.6
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 3.4e-92 342.0 227 71.8
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 4.5e-92 341.7 227 71.4
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 5.9e-92 341.3 222 72.1
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 7.7e-92 340.9 222 73.0
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 7.7e-92 340.9 222 72.1
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 2.2e-91 339.3 228 69.3
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.2e-91 339.3 222 72.1
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 3.8e-91 338.6 229 69.9
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 3.8e-91 338.6 228 71.1
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 5.0e-91 338.2 222 73.9
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 6.5e-91 337.8 228 70.6
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 6.5e-91 337.8 222 71.6
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 8.5e-91 337.4 227 70.0
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 8.5e-91 337.4 228 69.7
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 8.5e-91 337.4 227 69.6
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 3.2e-90 335.5 227 69.6
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 3.2e-90 335.5 222 73.0
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 5.5e-90 334.7 222 73.0
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 7.2e-90 334.3 227 70.0
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 7.2e-90 334.3 228 70.2
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 9.4e-90 334.0 222 72.1
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.2e-89 333.6 222 71.6
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.2e-89 333.6 222 70.7
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 1.6e-89 333.2 222 70.3
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.6e-89 333.2 222 72.1
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 2.1e-89 332.8 227 68.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.1e-89 332.8 223 73.5
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 6.1e-89 331.3 228 69.7
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.4e-88 330.1 222 68.9
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 2.3e-88 329.3 228 66.7
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 5.1e-88 328.2 222 70.3
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 6.7e-88 327.8 222 69.4
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 6.7e-88 327.8 222 70.7
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.1e-87 327.0 227 68.7
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.1e-87 327.0 222 68.5
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.5e-87 326.6 222 68.9
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.5e-87 326.6 222 70.3
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.0e-87 326.2 222 68.5
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 2.0e-87 326.2 228 68.4
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 5.7e-87 324.7 222 69.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 5.7e-87 324.7 208 74.0
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 7.4e-87 324.3 223 68.2
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-87 324.3 223 68.2
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-87 324.3 223 68.2
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 7.4e-87 324.3 223 68.2
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 9.7e-87 323.9 223 68.2
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-86 323.6 222 68.0
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-86 323.6 222 68.0
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 1.3e-86 323.6 223 68.2
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.3e-86 323.6 229 66.8
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 2.2e-86 322.8 222 68.5
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.8e-85 319.7 222 68.9
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 2.4e-85 319.3 209 75.6
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 6.9e-85 317.8 215 72.6
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 7.7e-84 314.3 223 66.4
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.8e-83 312.0 227 64.3
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.4e-82 310.1 223 66.8
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.9e-82 309.7 227 67.4
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 3.2e-82 308.9 223 67.7
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 9.4e-82 307.4 203 75.9
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.6e-81 306.6 228 62.7
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.4e-80 303.5 226 62.8
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 5.7e-79 298.1 222 62.6
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.0e-75 285.0 195 71.8
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 1.1e-74 283.9 191 69.1
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 2.5e-74 282.7 209 67.9
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 3.2e-74 282.3 222 59.9
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 8.0e-73 277.7 197 67.0
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 2.6e-71 272.7 222 62.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.6e-65 253.4 222 54.5
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 4.4e-63 245.4 168 72.6
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 2.8e-62 242.7 173 69.4
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.6e-60 236.9 222 52.7
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.0e-56 224.2 149 70.5
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 7.5e-55 218.0 226 51.3
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 4.8e-54 215.3 227 51.1
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 8.3e-54 214.5 229 49.3
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 6.8e-48 194.9 139 69.1
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 7.5e-47 191.4 155 58.1
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 9.8e-47 191.0 259 40.9
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.6e-44 183.7 222 45.5
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 2.0e-44 183.3 128 70.3
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 5.6e-42 175.3 199 49.2
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 6.1e-41 171.8 222 43.7
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.2e-39 167.5 223 41.3
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.5e-39 167.2 196 50.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 1.2e-31 141.0 172 45.3
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.7e-27 127.1 106 63.2
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 2.3e-27 126.7 261 33.3
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.8e-25 119.8 79 72.2
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 8.6e-19 98.2 62 71.0
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 6.8e-16 88.6 51 78.4
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 8.9e-16 88.2 64 67.2
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 5.4e-13 79.0 46 78.3
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 3.9e-11 72.8 51 64.7
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 9.6e-10 68.2 50 68.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 2.4e-08 63.5 41 65.9
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 4.0e-08 62.8 39 71.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.2e-07 61.2 202 26.2
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 6.4e-06 55.5 38 63.2


User provided reference genes

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