Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 3.1e-190 668.3 344 100.0
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 1.8e-169 599.4 341 90.3
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 3.3e-131 472.2 344 73.3
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 1.1e-126 457.2 242 96.7
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 1.2e-112 410.6 344 60.8
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 5.0e-111 405.2 344 60.2
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 7.2e-110 401.4 330 61.5
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 3.6e-109 399.1 344 58.4
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 3.7e-106 389.0 344 57.3
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 4.8e-106 388.7 345 59.4
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 1.7e-103 380.2 334 59.3
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 1.9e-102 376.7 345 58.6
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.9e-102 376.7 344 58.4
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.2e-101 374.0 344 56.4
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.1e-101 373.2 344 56.4
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 2.1e-101 373.2 344 56.4
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 1.8e-100 370.2 333 58.3
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 5.1e-100 368.6 328 56.4
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 5.1e-100 368.6 344 54.9
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 2.0e-99 366.7 338 57.1
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.0e-99 366.7 344 55.5
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 2.6e-99 366.3 335 57.6
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 1.7e-98 363.6 326 55.8
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 3.7e-98 362.5 353 55.0
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 2.4e-97 359.8 339 54.0
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 1.3e-95 354.0 335 56.1
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 2.9e-95 352.8 344 55.8
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 5.0e-95 352.1 316 56.3
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 5.5e-94 348.6 339 54.6
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 9.4e-94 347.8 344 56.1
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 1.2e-93 347.4 344 52.9
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 1.6e-93 347.1 329 54.4
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 2.7e-93 346.3 300 56.7
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 8.0e-93 344.7 339 52.5
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 6.7e-92 341.7 339 51.0
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.0e-91 340.1 344 53.5
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 3.3e-91 339.3 318 54.1
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 4.4e-91 339.0 344 53.5
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 9.7e-91 337.8 341 53.4
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 9.7e-91 337.8 344 53.5
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 2.8e-90 336.3 339 52.5
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 4.8e-90 335.5 317 53.0
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 6.3e-90 335.1 340 52.6
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 1.4e-89 334.0 333 52.6
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 2.4e-89 333.2 321 52.0
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 3.1e-89 332.8 317 52.7
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 4.1e-89 332.4 311 52.7
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.6e-88 330.5 305 55.7
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 2.0e-88 330.1 317 52.1
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.7e-88 329.7 340 52.1
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 7.7e-88 328.2 324 54.6
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 1.7e-87 327.0 333 54.7
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 2.2e-87 326.6 334 51.5
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 5.0e-87 325.5 333 48.9
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 6.5e-87 325.1 323 51.1
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 1.1e-86 324.3 350 52.0
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 2.5e-86 323.2 327 52.0
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 3.2e-86 322.8 346 52.0
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 5.5e-86 322.0 327 51.1
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.4e-84 317.4 327 50.5
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.3e-84 316.6 331 51.1
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 1.3e-82 310.8 344 49.1
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 8.3e-82 308.1 343 49.6
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 4.1e-81 305.8 341 50.7
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 5.4e-81 305.4 315 52.4
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 2.0e-80 303.5 323 49.2
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 7.7e-80 301.6 335 49.3
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 2.5e-78 296.6 317 48.9
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 3.6e-77 292.7 328 48.8
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 1.0e-76 291.2 329 47.7
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 2.3e-76 290.0 318 49.7
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 3.0e-76 289.7 318 49.7
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 6.8e-76 288.5 318 49.4
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.2e-75 287.7 319 50.2
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 1.5e-75 287.3 318 49.1
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 3.4e-75 286.2 323 47.4
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 5.7e-75 285.4 317 48.9
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 9.8e-75 284.6 318 49.1
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 4.9e-74 282.3 317 48.3
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 6.3e-74 282.0 346 46.8
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.8e-73 280.4 311 47.9
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 1.8e-73 280.4 313 48.6
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 2.7e-72 276.6 296 48.0
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 4.5e-72 275.8 318 47.5
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 4.5e-72 275.8 339 46.6
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 4.5e-72 275.8 318 47.5
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 5.9e-72 275.4 316 46.8
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 1.0e-71 274.6 318 47.8
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 2.3e-71 273.5 318 47.5
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.6e-69 267.3 269 53.2
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 5.0e-63 245.7 318 44.3
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 4.4e-59 232.6 230 53.5
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 8.6e-55 218.4 230 50.0
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 4.0e-52 209.5 161 64.0
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 3.5e-48 196.4 155 61.9
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 3.9e-47 193.0 184 54.9
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 8.1e-37 158.7 140 66.4
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 2.5e-30 137.1 171 46.2
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 2.0e-27 127.5 134 49.3
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 2.9e-26 123.6 113 54.9
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.9e-23 113.2 185 38.4
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.9e-23 113.2 97 58.8
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 3.3e-22 110.2 183 38.8
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 3.3e-14 83.6 139 39.6
MELO3C027487.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.4e-12 77.4 49 81.6
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 3.5e-08 63.5 190 24.7
CsaV3_5G005760 Cucumis sativus L. HOM05D003039 ORTHO05D008410 6.0e-08 62.8 196 24.5
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 6.0e-08 62.8 196 26.0
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 8.7e-07 58.9 128 32.8
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 8.7e-07 58.9 76 46.1
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 1.5e-06 58.2 112 33.9
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 1.5e-06 58.2 88 38.6
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 2.5e-06 57.4 203 27.1
Haze_04486 Corylus avellana HOM05D003039 ORTHO05D008410 3.3e-06 57.0 136 29.4
Carub.0007s0364 Capsella rubella HOM05D000891 ORTHO05D000761 4.3e-06 56.6 123 27.6
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 7.4e-06 55.8 171 24.6
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 9.6e-06 55.5 118 29.7
QL07p027161 Quercus lobata HOM05D003039 ORTHO05D008410 9.6e-06 55.5 136 28.7


User provided reference genes

Program Settings