Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 2342.8 1199 100.0
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 2273.8 1199 97.3
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 2223.0 1202 94.8
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1931.0 1182 83.7
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1714.9 1206 72.6
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1694.5 1205 71.9
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1674.4 1205 71.7
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1672.9 1204 70.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1666.0 1206 70.9
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1666.0 1206 71.0
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1663.7 1204 70.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1658.7 1205 71.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1657.1 1205 70.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1657.1 1207 70.8
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1656.3 1205 70.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1652.1 1206 70.5
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1649.4 1203 70.5
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1648.6 1209 70.2
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1647.5 1208 70.4
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1645.9 1209 70.4
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1636.3 1205 70.1
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1635.2 1203 69.8
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1632.1 1203 69.7
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1630.5 1203 69.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1624.4 1206 69.0
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1624.0 1203 69.2
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1621.3 1203 69.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1620.5 1203 69.1
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1617.4 1213 68.8
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1612.0 1211 68.0
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1607.4 1207 68.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1599.7 1204 68.2
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1596.6 1202 67.9
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1203 68.2
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1585.5 1168 70.1
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1580.5 1211 67.5
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1205 67.9
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1578.1 1206 67.4
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1577.4 1179 68.4
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1576.6 1203 67.6
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1576.2 1184 69.2
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1563.1 1205 67.2
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1563.1 1202 66.0
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1559.7 1218 66.2
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1553.5 1205 65.6
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1550.4 1209 66.0
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1548.5 1204 66.1
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1548.5 1202 65.2
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1545.4 1205 66.3
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1545.0 1162 67.6
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1537.7 1207 65.2
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1537.3 1205 65.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1533.1 1211 65.8
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1532.7 1205 66.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1531.9 1203 65.2
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1529.6 1205 64.9
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1528.5 1209 64.7
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1524.2 1205 64.5
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1523.8 1207 66.0
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1522.7 1207 65.4
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1521.1 1211 63.8
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1521.1 1207 64.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1520.4 1207 64.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1518.4 1211 63.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1518.1 1201 65.4
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1516.5 1203 64.3
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1514.2 1202 64.2
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1511.9 1207 64.9
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1507.7 1208 64.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1501.9 1204 64.4
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1499.6 1202 63.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1499.6 1170 66.1
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1495.7 1210 63.9
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1492.6 1208 64.2
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1485.3 1188 64.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1479.9 1219 62.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1479.5 1203 64.3
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1478.4 1179 64.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1468.4 1207 62.8
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1468.0 1203 64.5
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1466.1 1117 67.5
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1461.4 1188 63.3
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1446.8 1188 62.8
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1446.4 1205 61.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1442.6 1205 63.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1438.7 1204 62.5
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1430.2 1202 61.8
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1427.5 1204 62.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1403.7 1263 59.5
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1391.7 1213 60.8
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1370.9 1139 62.6
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1332.8 1144 60.8
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1315.1 993 68.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1314.7 1183 57.7
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1314.3 1290 56.3
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1310.0 1207 59.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1305.4 1201 57.0
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1289.6 1205 55.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1287.3 1018 64.5
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1245.0 1220 54.0
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1175.6 1043 59.9
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1108.2 886 64.1
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1095.1 955 60.8
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-306 1056.6 805 67.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.6e-305 1053.1 837 67.0
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 3.1e-285 985.7 1150 50.4
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 9.1e-269 931.0 1232 42.9
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.1e-263 914.1 1234 41.8
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 7.0e-261 904.8 1237 42.6
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.5e-247 860.5 1176 43.5
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.8e-237 827.0 1211 40.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.4e-237 826.6 1155 42.4
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.6e-233 813.9 1155 42.1
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-231 807.4 1170 42.5
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.4e-231 805.8 634 65.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.2e-212 744.6 1078 43.6
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.3e-210 736.1 797 50.1
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 6.4e-206 722.2 1213 36.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-188 664.8 573 60.4
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.0e-187 661.8 600 59.2
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.3e-185 654.8 631 54.4
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.9e-174 616.3 542 59.0
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 2.9e-158 563.9 469 64.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.8e-147 528.1 419 65.2
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.5e-142 509.6 486 54.1
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 9.8e-114 416.0 321 66.4
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-101 375.2 297 65.3
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.9e-81 308.1 1363 23.3
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.8e-74 283.9 267 52.4
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 4.6e-71 274.2 211 66.8
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 8.1e-68 263.5 210 62.4
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.5e-66 259.2 187 72.2
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 7.6e-58 230.3 216 59.3
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.4e-51 209.5 435 32.6
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.5e-50 206.1 479 31.5
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 3.0e-38 165.2 108 73.1
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.0e-33 150.2 793 23.3
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 5.2e-22 111.3 95 60.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.7e-17 96.3 91 54.9
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.7e-17 96.3 75 65.3
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 2.2e-17 95.9 348 27.6
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.8e-14 86.3 63 69.8
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-13 83.2 79 55.7
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.4e-13 82.0 78 57.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.1e-11 77.0 50 76.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.1e-11 77.0 50 76.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.8e-11 76.3 76 52.6
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 9.1e-11 73.9 76 50.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 2.0e-10 72.8 71 50.7
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.7e-10 70.9 66 57.6
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.3e-09 70.1 82 50.0
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-09 69.7 75 53.3
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.0e-09 68.2 75 52.0
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 9.5e-08 63.9 318 23.9
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 5.2e-06 58.2 182 25.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 6.8e-06 57.8 46 52.2


User provided reference genes

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