Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 2.4e-170 602.1 304 100.0
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 7.1e-170 600.5 304 99.7
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 8.1e-166 587.0 304 98.0
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 2.9e-155 552.0 304 92.8
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 2.7e-153 545.4 304 91.4
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 3.0e-144 515.4 301 83.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 3.9e-144 515.0 301 84.7
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 3.9e-144 515.0 301 84.1
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.0e-143 512.7 302 82.5
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 4.3e-143 511.5 302 83.8
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 7.4e-143 510.8 301 83.1
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 7.4e-143 510.8 302 84.4
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.7e-142 509.6 302 83.4
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.7e-142 509.6 302 81.5
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.4e-141 506.5 301 81.7
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.8e-141 506.1 301 81.7
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.8e-141 506.1 302 81.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.2e-140 503.4 317 79.2
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 1.2e-140 503.4 301 81.1
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.5e-140 503.1 302 81.8
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.0e-140 502.7 301 81.4
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.0e-140 502.7 301 81.4
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 5.9e-140 501.1 301 81.4
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 7.7e-140 500.7 302 81.1
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.7e-140 500.7 301 81.1
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.7e-140 500.7 301 81.1
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.0e-139 500.4 301 81.7
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 1.3e-139 500.0 302 81.8
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.7e-139 499.6 302 81.1
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.2e-139 499.2 301 80.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.2e-139 499.2 302 80.8
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 3.8e-139 498.4 302 80.5
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 8.5e-139 497.3 302 80.8
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.9e-138 496.1 302 80.5
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.9e-138 496.1 301 80.1
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 2.5e-138 495.7 302 80.1
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 5.5e-138 494.6 302 80.5
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 9.4e-138 493.8 302 79.8
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.2e-137 493.4 302 79.5
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.2e-137 493.4 302 80.1
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.6e-137 493.0 302 80.1
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.6e-137 493.0 302 80.5
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.6e-137 493.0 302 79.8
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.1e-137 492.7 301 79.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.1e-137 492.7 301 79.4
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.7e-137 492.3 302 80.1
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.7e-137 492.3 300 80.3
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 3.6e-137 491.9 302 79.5
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 3.6e-137 491.9 302 80.5
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 3.6e-137 491.9 302 80.8
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 4.7e-137 491.5 302 79.1
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.7e-137 491.5 301 79.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 6.1e-137 491.1 302 79.8
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 7.9e-137 490.7 302 79.8
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.0e-136 490.3 302 80.8
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.0e-136 488.8 297 80.5
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.0e-136 488.8 302 79.1
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.9e-136 488.4 302 80.5
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 5.1e-136 488.0 301 80.1
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.1e-135 486.9 302 78.8
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.5e-135 486.5 302 77.8
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.3e-135 485.3 300 79.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 4.4e-135 485.0 302 80.5
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 7.4e-135 484.2 302 77.5
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 2.8e-134 482.3 302 76.8
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 8.2e-134 480.7 302 77.8
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.4e-133 479.9 301 78.4
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 2.4e-133 479.2 302 76.5
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.4e-133 479.2 302 77.2
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 5.3e-133 478.0 302 78.1
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 7.0e-133 477.6 302 77.5
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 7.0e-133 477.6 302 77.8
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.0e-132 476.1 303 77.6
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 3.5e-132 475.3 300 77.7
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 3.5e-132 475.3 302 78.5
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 7.7e-132 474.2 302 77.2
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.0e-131 473.8 301 76.7
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.3e-131 473.4 302 76.8
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.7e-131 473.0 303 76.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.2e-131 472.6 303 76.9
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 2.2e-131 472.6 341 70.7
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.8e-131 471.9 301 76.4
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 5.0e-131 471.5 294 78.2
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.1e-130 470.3 302 77.5
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.5e-130 469.9 303 75.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.5e-130 469.9 302 76.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.5e-130 469.9 302 76.5
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.9e-130 469.5 303 76.2
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 2.5e-130 469.2 303 75.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 76.6
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 75.9
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 74.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 7.2e-130 467.6 302 76.2
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 7.2e-130 467.6 301 76.4
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 9.4e-130 467.2 301 76.7
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.1e-129 466.1 300 75.0
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 3.6e-129 465.3 301 76.1
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 4.7e-129 464.9 301 74.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 8.0e-129 464.2 303 75.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.3e-128 462.6 301 74.1
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 2.3e-128 462.6 301 75.7
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 4.4e-127 458.4 303 74.6
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 7.4e-127 457.6 303 73.9
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 9.7e-127 457.2 322 72.0
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.3e-126 456.8 303 73.9
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.2e-126 456.1 302 74.5
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 2.2e-126 456.1 307 73.6
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 4.8e-126 454.9 337 69.4
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 8.2e-126 454.1 302 74.8
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.8e-125 453.0 316 72.5
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 5.3e-125 451.4 296 74.0
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 5.9e-124 448.0 303 72.3
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 2.9e-123 445.7 300 73.0
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 4.2e-122 441.8 260 83.5
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.0e-119 433.0 295 71.5
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 7.0e-117 424.5 293 71.0
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 9.1e-117 424.1 300 68.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.7e-115 419.9 241 83.0
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.2e-115 419.5 289 71.6
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 2.9e-115 419.1 340 62.9
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 8.5e-115 417.5 249 80.3
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 8.5e-115 417.5 311 69.5
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 6.8e-112 407.9 302 68.9
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.2e-111 407.1 301 68.4
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 7.5e-103 377.9 301 63.8
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 8.3e-102 374.4 300 62.3
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.2e-100 370.5 298 62.8
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.5e-98 362.8 301 64.5
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.1e-96 355.9 510 43.5
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 7.5e-95 351.3 289 58.5
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 9.8e-95 350.9 209 79.4
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 8.3e-94 347.8 209 78.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.5e-92 342.4 220 76.8
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 3.9e-91 339.0 201 83.1
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.5e-82 310.5 244 68.9
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 2.7e-76 289.7 271 53.5
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.6e-76 288.9 246 57.7
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.9e-74 283.5 244 62.7
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.1e-65 253.4 154 80.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.3e-54 217.6 299 42.8
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.6e-52 209.1 299 41.5
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.2e-46 190.3 153 60.8
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 4.2e-45 186.0 108 77.8
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 2.6e-39 166.8 101 78.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 6.5e-38 162.2 197 50.8
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.5e-34 150.2 84 84.5
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 8.8e-27 125.2 84 69.0
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 4.8e-25 119.4 83 74.7
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 9.1e-24 115.2 239 29.7
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.2e-21 106.7 87 63.2
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.6e-20 103.2 161 41.0
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 3.6e-20 103.2 123 42.3
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.1e-18 98.2 70 65.7
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.5e-18 97.8 86 59.3
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 5.7e-18 95.9 121 46.3
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 3.1e-16 90.1 63 63.5
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 2.3e-11 73.9 54 74.1
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 1.2e-07 61.6 40 67.5
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 3.5e-07 60.1 46 60.9


User provided reference genes

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