Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 3.0e-170 602.1 370 100.0
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 5.3e-159 564.7 370 78.4
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 6.9e-143 511.1 393 69.0
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.2e-133 479.6 374 66.6
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 9.4e-132 474.2 375 66.9
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 7.5e-105 384.8 231 77.5
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 9.8e-105 384.4 260 70.8
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.1e-103 380.9 225 76.4
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 4.1e-103 379.0 260 70.4
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 5.4e-103 378.6 259 69.5
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 2.0e-102 376.7 231 75.8
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-101 374.0 220 78.2
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-101 374.0 220 78.2
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 1.7e-101 373.6 262 68.7
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 5.0e-101 372.1 225 76.4
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-100 370.9 262 68.7
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 1.9e-100 370.2 222 78.4
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 3.2e-100 369.4 230 75.7
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 5.5e-100 368.6 220 77.3
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.5e-100 368.6 262 67.9
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 7.2e-100 368.2 224 78.1
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 7.2e-100 368.2 269 67.7
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 7.2e-100 368.2 230 75.7
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 9.4e-100 367.9 271 67.2
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.2e-99 367.5 226 74.8
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 2.7e-99 366.3 265 67.9
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.1e-99 365.2 229 74.7
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 8.0e-99 364.8 230 73.0
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.0e-98 364.4 261 66.7
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.0e-98 364.4 229 74.7
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.0e-98 364.4 219 77.6
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.0e-98 364.4 216 77.8
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 5.2e-98 362.1 231 73.2
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 5.2e-98 362.1 224 73.7
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 6.8e-98 361.7 222 75.7
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.8e-98 361.7 262 67.2
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 6.8e-98 361.7 260 66.5
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 6.8e-98 361.7 224 77.2
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 6.8e-98 361.7 218 75.2
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 8.8e-98 361.3 231 72.7
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.5e-97 360.5 230 74.3
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 4.4e-97 359.0 230 71.3
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 5.7e-97 358.6 221 74.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 5.7e-97 358.6 260 65.8
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 9.8e-97 357.8 235 71.5
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 9.8e-97 357.8 259 65.6
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.3e-96 357.5 260 66.5
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 1.7e-96 357.1 225 75.6
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.7e-96 357.1 241 69.3
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 2.2e-96 356.7 268 66.8
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 2.2e-96 356.7 241 71.0
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 2.8e-96 356.3 265 65.3
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.8e-96 356.3 237 70.9
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 4.9e-96 355.5 233 73.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 6.3e-96 355.1 263 65.0
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 8.3e-96 354.8 235 71.1
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 8.3e-96 354.8 239 69.5
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 8.3e-96 354.8 244 68.9
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.4e-95 354.0 225 72.9
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 4.1e-95 352.4 225 72.4
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.6e-94 350.5 222 74.3
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.5e-94 349.4 225 72.0
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 4.5e-94 349.0 219 73.5
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 2.3e-93 346.7 234 68.8
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 2.3e-93 346.7 258 65.9
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.9e-93 346.3 241 67.6
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 6.6e-93 345.1 226 71.2
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 8.6e-93 344.7 270 63.3
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 8.6e-93 344.7 244 65.6
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.6e-93 344.7 241 67.2
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 1.1e-92 344.4 224 70.1
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.9e-92 343.6 248 65.3
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 2.5e-92 343.2 239 67.8
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 2.5e-92 343.2 227 71.4
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 7.2e-92 341.7 233 68.7
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.2e-91 340.9 216 75.0
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.1e-91 340.1 235 68.9
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 2.1e-91 340.1 254 65.7
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.1e-91 340.1 230 69.1
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 2.8e-91 339.7 240 65.8
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 2.8e-91 339.7 235 68.9
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 2.8e-91 339.7 254 64.2
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 3.6e-91 339.3 235 68.5
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 4.7e-91 339.0 240 69.6
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.0e-90 337.8 295 58.0
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.0e-90 337.8 212 74.1
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.8e-90 337.0 224 69.2
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.3e-90 336.7 227 68.7
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 5.2e-90 335.5 210 73.8
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 6.8e-90 335.1 222 70.3
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 6.8e-90 335.1 234 68.8
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 6.8e-90 335.1 234 68.8
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 6.8e-90 335.1 236 68.6
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 2.0e-89 333.6 234 68.4
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 2.6e-89 333.2 206 74.3
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 4.4e-89 332.4 223 68.2
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 4.4e-89 332.4 206 75.7
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.4e-89 332.4 215 71.2
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 5.7e-89 332.0 254 61.4
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.7e-88 329.3 224 71.4
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 8.3e-88 328.2 216 71.8
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 1.8e-87 327.0 218 70.6
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.8e-87 327.0 232 66.4
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 4.1e-87 325.9 256 60.5
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.6e-86 322.4 244 65.6
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 1.1e-84 317.8 249 63.9
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.3e-82 310.1 236 66.1
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 6.8e-82 308.5 234 66.2
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.0e-77 294.7 395 42.8
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 5.0e-77 292.4 184 75.5
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.3e-74 283.5 199 68.3
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 2.6e-73 280.0 189 69.8
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 3.2e-71 273.1 276 53.3
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.2e-70 271.2 180 71.7
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.9e-68 263.8 224 59.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.1e-67 260.4 249 56.6
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 4.7e-67 259.2 210 58.1
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 6.2e-67 258.8 221 61.1
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 8.1e-67 258.5 188 64.4
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.5e-60 237.7 124 80.6
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.6e-59 234.2 230 53.5
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.7e-59 232.6 220 52.3
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 4.0e-58 229.6 129 76.0
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 1.2e-57 228.0 162 64.8
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.9e-56 223.4 136 75.7
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.9e-56 222.6 127 75.6
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.4e-55 220.3 162 61.7
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 6.6e-53 212.2 199 54.3
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 1.4e-47 194.5 177 58.2
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 6.0e-46 189.1 140 65.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.1e-44 184.9 159 57.9
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.2e-41 174.9 124 59.7
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 7.9e-38 162.2 185 42.7
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.4e-34 151.4 86 75.6
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 9.3e-31 138.7 90 67.8
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.9e-24 117.1 133 48.9
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 5.5e-15 86.3 82 57.3
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.3e-13 80.9 75 61.3
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.2e-08 64.3 32 81.2
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 4.2e-07 60.1 62 56.5


User provided reference genes

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