Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G003640 Cucumis sativus L. HOM05D003067 ORTHO05D009378 2.7e-166 588.6 289 100.0
MELO3C004431.2 Cucumis melo HOM05D003067 ORTHO05D009378 6.2e-147 524.2 318 84.9
ClCG02G017140 Citrullus lanatus HOM05D003067 ORTHO05D009378 4.3e-132 474.9 312 77.2
QL02p092630 Quercus lobata HOM05D003067 ORTHO05D009378 2.4e-66 256.5 308 45.5
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 2.6e-65 253.1 277 49.1
Prupe.7G260000 Prunus persica HOM05D003067 ORTHO05D009378 5.9e-65 251.9 290 46.6
FvH4_1g01190 Fragaria vesca HOM05D003067 ORTHO05D009378 1.7e-64 250.4 284 46.5
CiPaw.16G115000 Carya illinoinensis HOM05D003067 ORTHO05D009378 5.0e-64 248.8 298 44.6
RcHm_v2.0_Chr2g0085991 Rosa chinensis HOM05D003067 ORTHO05D009378 8.5e-64 248.1 287 46.7
FAN28G0267 Fragaria x ananassa HOM05D003067 ORTHO05D009378 1.5e-63 247.3 284 46.1
Haze_19237 Corylus avellana HOM05D003067 ORTHO05D009378 1.8e-61 240.4 326 42.9
Ciclev10009097m.g Citrus clementina HOM05D003067 ORTHO05D009378 2.0e-60 236.9 293 44.7
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 2.6e-60 236.5 281 44.5
Hma1.2p1_0028F.1_g017380 Hydrangea macrophylla HOM05D003067 ORTHO05D009378 2.6e-60 236.5 282 44.7
CANSAT11G2322 Cannabis sativa HOM05D003067 ORTHO05D009378 4.4e-60 235.7 301 42.9
Thecc.09G033900 Theobroma cacao HOM05D003067 ORTHO05D009378 1.7e-59 233.8 288 43.4
Cc06_g15260 Coffea canephora HOM05D003067 ORTHO05D009378 1.4e-58 230.7 297 44.1
Gohir.D07G030100 Gossypium hirsutum HOM05D003067 ORTHO05D009378 4.5e-57 225.7 288 43.1
Dinv41400 Davidia involucrata HOM05D003067 ORTHO05D009378 2.9e-56 223.0 263 45.6
Gohir.A07G026200 Gossypium hirsutum HOM05D003067 ORTHO05D009378 5.0e-56 222.2 289 42.9
Gorai.001G031300 Gossypium raimondii HOM05D003067 ORTHO05D009378 5.0e-56 222.2 289 42.9
Nn2g12305 Nelumbo nucifera HOM05D003067 ORTHO05D009378 1.9e-55 220.3 291 41.9
GSVIVG01003733001 Vitis vinifera HOM05D003067 ORTHO05D009378 5.5e-55 218.8 273 45.4
Aqoxy7G03467 Aquilegia oxysepala HOM05D003067 ORTHO05D009378 1.2e-54 217.6 293 43.0
Medtr2g450220 Medicago truncatula HOM05D003067 ORTHO05D009378 1.0e-53 214.5 302 42.7
Potri.006G187500 Populus trichocarpa HOM05D003067 ORTHO05D009378 4.0e-53 212.6 293 38.9
TWI34G0508 Tripterygium wilfordii HOM05D003067 ORTHO05D009378 4.0e-53 212.6 298 40.6
Potri.018G110300 Populus trichocarpa HOM05D003067 ORTHO05D009378 3.4e-52 209.5 302 38.4
Oeu021253.1 Olea europaea HOM05D003067 ORTHO05D009378 4.4e-52 209.1 295 41.0
Eucgr.C00366 Eucalyptus grandis HOM05D003067 ORTHO05D009378 2.2e-51 206.8 292 37.7
Actinidia38680 Actinidia chinensis HOM05D003067 ORTHO05D009378 2.4e-50 203.4 255 43.9
Nitab4.5_0001478g0120 Nicotiana tabacum HOM05D003067 ORTHO05D009378 2.4e-50 203.4 301 38.9
Sopen12g005120 Solanum pennellii HOM05D003067 ORTHO05D009378 7.0e-50 201.8 249 44.2
CAN.G551.28 Capsicum annuum HOM05D003067 ORTHO05D009378 1.2e-49 201.1 300 39.3
Solyc12g010230.2 Solanum lycopersicum HOM05D003067 ORTHO05D009378 1.0e-48 198.0 255 44.7
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 6.6e-48 195.3 193 49.7
PGR142G2789 Punica granatum HOM05D003067 ORTHO05D009378 8.6e-48 194.9 305 39.3
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 8.6e-48 194.9 289 41.9
COL.COLO4_18774 Corchorus olitorius HOM05D003067 ORTHO05D009378 1.6e-46 190.7 269 42.0
MSTRG.6118 Avicennia marina HOM05D003067 ORTHO05D009378 2.1e-46 190.3 296 37.2
ATR1153G020 Amborella trichopoda HOM05D003067 ORTHO05D009378 1.8e-45 187.2 292 39.0
CDE06G1077 Ceratophyllum demersum HOM05D003067 ORTHO05D009378 4.0e-45 186.0 292 38.4
HPP92_017493 Vanilla planifolia HOM05D003067 ORTHO05D009378 2.0e-44 183.7 287 36.9
AL7G21080 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 4.4e-44 182.6 293 37.5
Carub.0007s0954 Capsella rubella HOM05D003067 ORTHO05D009378 1.3e-43 181.0 293 38.2
MBI14_g05269_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D009378 1.7e-43 180.6 274 41.6
Os06g0183700 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D009378 4.9e-43 179.1 286 36.7
Duzib150G0133 Durio zibethinus HOM05D003067 ORTHO05D009378 6.3e-43 178.7 230 43.0
Peaxi162Scf00108g00714 Petunia axillaris HOM05D003067 ORTHO05D009378 1.4e-42 177.6 293 39.2
BcaNung03423 Brassica carinata HOM05D003067 ORTHO05D009378 9.2e-42 174.9 289 34.9
Thhalv10025917m.g Eutrema salsugineum HOM05D003067 ORTHO05D009378 9.2e-42 174.9 289 34.9
Sabra18G0093300 Salix brachista HOM05D003067 ORTHO05D009378 1.0e-40 171.4 366 30.9
Zm00001eb374750 Zea mays HOM05D003067 ORTHO05D009378 3.9e-40 169.5 287 36.9
Nitab4.5_0002315g0060 Nicotiana tabacum HOM05D003067 ORTHO05D009378 6.6e-40 168.7 282 35.8
Migut.J01329 Erythranthe guttata HOM05D003067 ORTHO05D009378 1.5e-39 167.5 291 35.7
Manes.14G112000 Manihot esculenta HOM05D003067 ORTHO05D009378 1.9e-39 167.2 227 38.3
A01p07190 Brassica napus HOM05D003067 ORTHO05D009378 5.6e-39 165.6 289 33.6
C01p07950 Brassica napus HOM05D003067 ORTHO05D009378 2.1e-38 163.7 289 33.2
BolC1t00782H Brassica oleracea HOM05D003067 ORTHO05D009378 2.1e-38 163.7 289 33.2
HanXRQChr05g0133261 Helianthus annuus HOM05D003067 ORTHO05D009378 3.6e-38 162.9 290 35.2
BraA01t00670Z Brassica rapa HOM05D003067 ORTHO05D009378 6.1e-38 162.2 289 33.2
BcaC09g51887 Brassica carinata HOM05D003067 ORTHO05D009378 1.8e-37 160.6 289 33.2
THA.LOC104803568 Tarenaya hassleriana HOM05D003067 ORTHO05D009378 6.8e-37 158.7 287 33.4
Lj6g0006451 Lotus japonicus HOM05D003067 ORTHO05D009378 2.6e-36 156.8 303 33.7
Sp7g28870 Schrenkiella parvula HOM05D003067 ORTHO05D009378 2.6e-36 156.8 290 33.8
Oeu043497.1 Olea europaea HOM05D003067 ORTHO05D009378 7.8e-33 145.2 184 46.2
Oeu043496.1 Olea europaea HOM05D003067 ORTHO05D009378 1.3e-32 144.4 184 44.6
FAN19G0469 Fragaria x ananassa HOM05D003067 ORTHO05D009378 1.2e-30 137.9 166 43.4
SGA_v2.0_scaffold265G46124 Striga asiatica HOM05D003067 ORTHO05D009378 1.6e-30 137.5 282 31.9
AT4G30993 Arabidopsis thaliana HOM05D003067 ORTHO05D009378 8.0e-30 135.2 209 36.4
SalBow1G0452 Salvia bowleyana HOM05D003067 ORTHO05D009378 8.0e-30 135.2 294 32.0
Lsat_1_v5_gn_8_59821 Lactuca sativa HOM05D003067 ORTHO05D009378 4.0e-29 132.9 279 33.0
MD02G1010100 Malus domestica HOM05D003067 ORTHO05D009378 5.2e-29 132.5 202 37.1
PGSC0003DMG400007894 Solanum tuberosum HOM05D003067 ORTHO05D009378 6.4e-27 125.6 175 42.3
vmacro06093 Vaccinium macrocarpon HOM05D003067 ORTHO05D009378 5.4e-26 122.5 268 34.3
Cpa.g.sc46.125 Carica papaya HOM05D003067 ORTHO05D009378 9.2e-26 121.7 202 38.6
CARHR238890 Cardamine hirsuta HOM05D003067 ORTHO05D009378 4.3e-23 112.8 171 36.8
Glyma.15G205500 Glycine max HOM05D003067 ORTHO05D009378 3.4e-20 103.2 230 31.7
DCAR_014819 Daucus carota HOM05D003067 ORTHO05D009378 3.2e-18 96.7 256 28.1
CSS0014498 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D009378 2.5e-15 87.0 140 35.0
Nitab4.5_0000525g0300 Nicotiana tabacum HOM05D003067 ORTHO05D009378 9.6e-15 85.1 187 32.6
Nitab4.5_0001478g0160 Nicotiana tabacum HOM05D003067 ORTHO05D009378 8.9e-13 78.6 156 32.7
MD02G1010000 Malus domestica HOM05D003067 ORTHO05D009378 3.4e-12 76.6 91 44.0
GSVIVG01003739001 Vitis vinifera HOM05D003067 ORTHO05D009378 1.0e-08 65.1 59 54.2
Mapoly0029s0107 Marchantia polymorpha HOM05D001297 ORTHO05D001135 3.9e-08 63.2 300 23.7
AL2G22600 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 1.5e-07 61.2 93 34.4
AL6G46700 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 1.9e-07 60.8 93 34.4
Nitab4.5_0008862g0010 Nicotiana tabacum HOM05D003067 ORTHO05D009378 1.3e-06 58.2 51 45.1
SGA_v2.0_scaffold113G31772 Striga asiatica HOM05D003067 ORTHO05D009378 1.3e-06 58.2 156 27.6
SGA_v2.0_scaffold214G42289 Striga asiatica HOM05D003067 ORTHO05D009378 1.6e-06 57.8 222 23.0


User provided reference genes

Program Settings