Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.8e-106 387.9 202 100.0
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.6e-93 345.1 202 91.1
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 9.8e-83 310.5 206 85.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 4.1e-73 278.5 206 76.7
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.1e-57 227.3 208 66.3
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 3.0e-39 166.0 215 56.3
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 8.7e-39 164.5 211 52.6
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.9e-38 163.3 231 51.1
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.9e-38 163.3 211 51.7
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 3.3e-38 162.5 208 51.4
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 7.3e-38 161.4 208 51.4
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.2e-35 154.1 208 50.0
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.2e-35 154.1 214 49.1
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.5e-35 153.7 209 51.2
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 4.9e-34 148.7 209 48.8
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 8.4e-34 147.9 212 49.5
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.1e-33 147.5 209 48.3
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.4e-33 146.4 210 51.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 9.3e-33 144.4 217 49.8
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 2.1e-32 143.3 207 46.4
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.0e-32 141.7 211 50.2
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.8e-32 141.4 212 49.5
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.0e-31 141.0 204 50.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.0e-31 141.0 213 49.3
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.3e-31 140.6 211 53.1
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.7e-31 140.2 212 49.1
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 2.3e-31 139.8 212 45.3
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.1e-31 138.7 207 50.2
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 5.1e-31 138.7 210 51.4
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.6e-31 138.3 213 45.5
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.6e-31 138.3 213 45.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 8.7e-31 137.9 220 48.2
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.5e-30 137.1 219 44.3
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.9e-30 136.7 222 50.9
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 1.9e-30 136.7 212 50.9
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.3e-30 136.0 210 46.2
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.6e-29 133.7 223 48.0
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-29 133.7 216 51.9
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 2.1e-29 133.3 208 45.7
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.1e-29 133.3 213 51.2
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 6.2e-29 131.7 209 48.3
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.1e-29 131.3 210 49.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 8.1e-29 131.3 211 45.0
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.1e-28 131.0 212 46.2
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.4e-28 130.6 206 45.6
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.8e-28 130.2 212 45.3
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.1e-28 129.4 219 48.4
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.3e-28 128.6 204 46.1
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.5e-27 127.1 219 48.9
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.5e-27 127.1 207 49.8
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.0e-27 126.7 214 44.4
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 2.0e-27 126.7 220 44.5
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 4.5e-27 125.6 208 50.0
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 5.8e-27 125.2 211 49.8
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.8e-27 125.2 210 47.1
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 7.6e-27 124.8 209 47.8
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 7.6e-27 124.8 207 46.4
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.2e-26 123.2 208 49.0
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 4.9e-26 122.1 203 44.8
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 6.4e-26 121.7 239 40.6
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 6.4e-26 121.7 207 47.8
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 8.4e-26 121.3 214 43.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 8.4e-26 121.3 218 42.7
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 8.4e-26 121.3 213 49.8
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.4e-25 120.6 216 41.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.4e-25 120.6 212 47.2
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.4e-25 119.8 214 45.8
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 5.4e-25 118.6 213 42.7
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 9.3e-25 117.9 206 44.2
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 2.1e-24 116.7 211 46.0
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.7e-24 116.3 207 42.0
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.5e-24 115.9 210 44.8
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.5e-24 115.9 209 41.1
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.5e-24 115.9 205 47.3
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.6e-24 115.5 215 41.4
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 4.6e-24 115.5 166 44.6
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 6.0e-24 115.2 212 40.6
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 7.9e-24 114.8 214 41.1
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.3e-23 114.0 215 40.9
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.3e-23 114.0 176 51.7
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.3e-23 114.0 197 42.1
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.3e-23 114.0 220 40.5
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 3.0e-23 112.8 216 43.1
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 6.7e-23 111.7 216 41.7
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 6.7e-23 111.7 216 41.2
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 6.7e-23 111.7 216 41.2
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 6.7e-23 111.7 216 41.7
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 8.7e-23 111.3 221 47.1
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.5e-22 110.5 224 43.3
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.5e-22 109.8 214 44.4
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.5e-22 109.8 219 42.5
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 5.6e-22 108.6 209 45.5
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.6e-22 108.6 180 47.8
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 7.4e-22 108.2 205 48.3
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 9.6e-22 107.8 211 44.1
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 9.6e-22 107.8 176 44.3
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.3e-21 107.5 210 42.4
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.8e-21 106.3 165 44.8
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.4e-20 104.0 213 39.9
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 2.4e-20 103.2 175 45.7
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 3.1e-20 102.8 220 39.5
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 9.0e-20 101.3 171 40.9
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.5e-19 100.5 199 38.7
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.0e-19 100.1 209 43.5
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.6e-19 99.8 142 47.9
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 4.5e-19 99.0 208 36.5
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 5.8e-19 98.6 205 36.6
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 5.8e-19 98.6 205 36.6
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 7.6e-19 98.2 208 36.5
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 7.6e-19 98.2 202 36.6
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.0e-18 97.8 208 40.4
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-18 97.8 208 36.1
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-18 97.4 209 36.4
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.3e-18 97.4 215 42.3
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-18 97.1 205 36.6
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.7e-18 97.1 205 36.6
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 2.9e-18 96.3 157 42.0
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.9e-18 95.5 134 46.3
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 4.9e-18 95.5 206 37.9
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-17 93.6 189 37.0
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.2e-17 92.4 211 42.2
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 9.3e-17 91.3 199 40.2
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-16 90.9 195 38.5
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.2e-16 90.9 157 45.2
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.7e-16 89.7 174 36.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 6.0e-16 88.6 211 41.2
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 7.9e-16 88.2 170 37.6
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 7.9e-16 88.2 156 44.2
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.9e-16 88.2 205 38.5
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.3e-15 87.4 223 41.7
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.8e-15 87.0 203 36.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.9e-15 85.9 156 37.8
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 3.9e-15 85.9 210 36.2
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 6.7e-15 85.1 170 45.3
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 8.7e-15 84.7 148 43.2
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 8.7e-15 84.7 198 38.4
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-14 84.3 212 36.3
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-14 84.3 204 37.7
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.5e-14 84.0 199 40.2
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.5e-14 84.0 206 33.5
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.5e-14 84.0 192 37.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 2.5e-14 83.2 173 35.3
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 2.5e-14 83.2 173 35.3
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 3.3e-14 82.8 213 39.4
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-14 82.8 215 34.4
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 4.3e-14 82.4 209 35.4
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.3e-13 80.9 94 54.3
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.1e-13 80.1 139 44.6
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.8e-13 79.7 176 42.0
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.8e-13 79.0 159 39.6
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 6.2e-13 78.6 203 38.4
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 6.2e-13 78.6 205 35.1
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 6.2e-13 78.6 167 41.3
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 8.2e-13 78.2 203 35.5
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.1e-12 76.3 146 41.1
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 6.9e-12 75.1 115 47.0
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 2.0e-11 73.6 133 41.4
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 2.6e-11 73.2 212 32.5
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-11 72.8 110 43.6
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 3.4e-11 72.8 168 37.5
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.0e-10 71.2 204 35.3
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.3e-10 70.9 165 31.5
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-10 70.5 211 34.1
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.2e-10 70.1 122 42.6
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 8.4e-10 68.2 127 47.2
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.6e-08 63.9 134 42.5
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-07 61.2 54 55.6
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 1.0e-07 61.2 105 45.7
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.8e-07 60.5 211 35.1
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 6.7e-07 58.5 200 34.5
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 6.7e-07 58.5 215 36.7
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 3.3e-06 56.2 221 30.3
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.3e-06 56.2 162 32.7
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 3.3e-06 56.2 211 29.9
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 4.3e-06 55.8 68 44.1
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 7.4e-06 55.1 191 33.5


User provided reference genes

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