Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 9.4e-281 969.5 492 100.0
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 5.2e-271 937.2 491 97.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.5e-249 865.9 492 89.8
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 7.8e-227 790.4 488 81.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.1e-223 778.5 486 80.9
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 6.9e-223 777.3 485 80.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.6e-222 775.4 492 79.5
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.7e-221 772.7 493 78.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.9e-220 769.2 487 79.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.1e-220 767.3 484 80.4
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-219 766.5 482 80.7
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-219 765.8 484 80.2
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.5e-219 765.0 492 79.5
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 7.9e-219 763.8 488 78.7
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.8e-218 762.7 485 79.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 3.9e-218 761.5 488 78.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 5.1e-218 761.1 487 78.4
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 5.1e-218 761.1 484 79.3
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 6.7e-218 760.8 486 78.6
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 8.7e-218 760.4 489 77.7
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.5e-217 758.8 487 78.0
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 9.6e-217 756.9 489 77.9
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 6.2e-216 754.2 485 77.5
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 6.2e-216 754.2 492 78.0
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.4e-215 753.1 483 79.3
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.4e-215 752.3 491 78.8
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 3.1e-215 751.9 487 76.8
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.1e-215 751.9 489 76.7
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 4.0e-215 751.5 489 76.9
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 5.3e-215 751.1 484 77.7
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.6e-214 748.8 489 76.7
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 4.5e-214 748.0 487 78.0
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.5e-214 748.0 490 77.3
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 7.6e-214 747.3 489 77.9
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-212 743.4 487 76.4
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-212 742.3 491 76.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 4.2e-212 741.5 484 78.9
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.2e-211 740.0 486 77.0
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.1e-211 739.2 490 74.1
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 7.9e-211 737.3 485 75.9
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 7.9e-211 737.3 484 76.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 7.9e-211 737.3 491 74.7
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.0e-210 736.9 486 77.4
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.0e-210 736.9 485 76.3
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.3e-210 736.5 491 74.7
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.3e-210 736.5 491 74.7
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 3.9e-210 734.9 486 76.3
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 8.7e-210 733.8 486 74.9
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.5e-209 733.0 481 77.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.9e-209 732.6 485 75.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.5e-209 732.3 485 76.3
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.3e-209 731.9 485 75.9
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 4.3e-209 731.5 491 75.4
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 7.4e-209 730.7 492 75.6
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.3e-208 729.9 485 74.8
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.7e-208 728.4 485 75.9
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.8e-208 728.0 491 76.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 4.8e-208 728.0 491 76.6
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 4.8e-208 728.0 489 75.1
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.2e-208 727.2 485 75.3
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-207 726.9 491 75.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.1e-207 726.9 488 76.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.4e-207 726.5 485 75.5
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.4e-207 726.5 491 74.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 2.4e-207 725.7 495 74.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.0e-207 724.9 484 74.2
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 4.0e-207 724.9 484 74.4
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 5.3e-207 724.5 481 75.9
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 5.3e-207 724.5 511 73.2
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 6.9e-207 724.2 484 74.4
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 6.9e-207 724.2 484 74.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 9.0e-207 723.8 484 74.2
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 9.0e-207 723.8 484 74.2
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 9.0e-207 723.8 486 75.7
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 9.0e-207 723.8 487 74.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-206 723.4 485 75.5
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.6e-206 722.2 485 74.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-205 719.5 484 73.6
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.7e-205 719.5 485 75.1
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.2e-205 719.2 485 74.4
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.2e-205 719.2 489 74.6
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 3.8e-205 718.4 494 72.5
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 8.4e-205 717.2 483 74.5
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-204 715.3 486 74.9
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 9.3e-204 713.8 485 74.6
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 6.0e-203 711.1 522 71.3
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 7.9e-203 710.7 487 73.1
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.3e-202 709.1 505 71.5
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 3.9e-202 708.4 495 71.7
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.7e-200 701.8 492 72.8
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.7e-200 701.8 492 72.8
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.1e-199 700.3 526 70.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.2e-198 696.8 486 72.6
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.7e-198 694.1 485 74.4
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.2e-197 692.6 486 74.3
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.9e-196 689.5 488 71.7
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.5e-196 688.0 488 71.7
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 7.2e-196 687.6 485 70.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.0e-194 683.7 486 71.0
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 8.8e-194 680.6 498 70.9
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.8e-191 672.9 457 74.2
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 9.1e-191 670.6 487 69.0
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 9.1e-191 670.6 491 69.0
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.6e-187 659.8 516 67.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 7.9e-187 657.5 484 68.8
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.8e-186 656.4 497 66.4
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.3e-186 656.0 484 67.4
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.6e-185 652.5 495 67.9
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.7e-184 648.7 488 68.2
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 6.3e-184 647.9 495 66.7
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 6.3e-184 647.9 519 65.5
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.4e-183 646.7 581 59.4
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.8e-183 646.4 359 93.0
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.4e-183 646.0 486 69.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 7.0e-183 644.4 491 70.5
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.7e-181 639.8 563 61.3
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.4e-180 636.7 459 70.6
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 5.5e-180 634.8 489 67.5
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.6e-179 632.1 483 70.0
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.6e-179 632.1 492 63.8
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.4e-178 630.2 487 68.2
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 5.2e-178 628.2 486 65.4
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.7e-176 623.2 484 66.3
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.2e-174 617.1 503 61.8
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.3e-169 599.0 394 76.1
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.3e-165 587.0 494 64.2
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 4.4e-161 572.0 529 57.3
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.7e-158 562.8 457 62.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 5.9e-158 561.6 376 76.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.5e-156 556.2 491 59.3
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.1e-155 551.6 388 74.0
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 4.5e-150 535.4 543 56.2
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.5e-148 530.4 393 68.2
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.5e-148 530.4 346 78.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.9e-143 513.5 351 75.5
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 4.6e-142 508.8 391 68.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-136 490.7 363 71.1
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 9.5e-132 474.6 358 69.8
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.9e-128 462.2 466 54.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-126 456.4 396 64.9
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.1e-123 444.9 281 81.5
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.2e-122 442.2 299 76.6
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-117 426.4 273 79.9
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 7.3e-116 421.8 275 79.3
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-115 421.0 300 70.3
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.2e-88 330.5 231 73.2
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.8e-83 313.5 251 68.1
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.9e-80 303.5 171 85.4
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 6.5e-80 302.4 477 39.0
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.6e-78 296.2 189 76.7
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.0e-69 268.5 224 65.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.4e-66 258.1 133 97.0
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 9.7e-60 235.3 200 60.5
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.8e-56 223.4 131 80.9
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.5e-55 221.5 132 80.3
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 8.8e-53 212.2 232 53.4
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 8.8e-53 212.2 326 42.6
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.6e-52 210.7 153 71.2
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.7e-51 208.0 130 77.7
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.9e-47 194.5 298 44.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 6.8e-45 186.0 114 77.2
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.5e-39 166.4 114 70.2
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.0e-36 157.9 126 63.5
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.4e-36 156.8 95 76.8
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.4e-36 156.8 95 76.8
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 9.2e-34 149.1 216 43.1
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 3.7e-27 127.1 65 96.9
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 4.6e-25 120.2 68 83.8
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.5e-23 114.4 67 77.6
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 5.6e-23 113.2 60 86.7
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 4.7e-22 110.2 97 60.8
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.0e-21 107.1 66 75.8
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.2e-21 106.7 65 80.0
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.4e-20 103.6 65 76.9
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.3e-19 102.1 65 75.4
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 7.1e-18 96.3 100 56.0
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.2e-17 95.5 65 76.9
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.7e-17 94.4 77 64.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.5e-15 87.8 188 36.7
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.2e-13 80.1 48 70.8
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 2.2e-11 74.7 38 86.8
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 1.5e-07 62.0 48 72.9


User provided reference genes

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