Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 4.6e-258 894.0 447 100.0
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 2.8e-231 805.1 448 89.7
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.9e-228 795.0 411 95.6
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 8.2e-223 776.9 447 85.2
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 9.3e-219 763.5 447 84.3
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 4.7e-178 628.2 446 69.3
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.8e-175 619.0 430 70.0
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.8e-175 619.0 446 67.5
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 7.0e-174 614.4 446 67.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 2.0e-173 612.8 445 67.9
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.0e-173 612.8 445 69.7
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 5.0e-172 608.2 447 67.8
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 5.0e-172 608.2 446 67.5
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 5.0e-172 608.2 443 67.7
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.9e-171 606.3 433 68.6
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 2.5e-171 605.9 430 68.6
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 9.5e-171 604.0 433 68.6
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.8e-170 602.4 424 69.8
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.7e-170 601.7 443 68.8
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.0e-170 600.9 431 68.2
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.8e-169 599.7 424 70.0
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 3.0e-169 599.0 446 66.1
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 5.2e-169 598.2 448 66.3
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.5e-168 596.7 448 67.9
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.5e-168 596.7 429 68.3
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.6e-168 595.9 426 68.5
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 2.6e-168 595.9 447 68.2
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 5.7e-168 594.7 448 67.4
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.7e-167 593.2 449 66.8
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.2e-167 592.8 431 67.7
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.2e-167 592.8 437 65.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 4.9e-167 591.7 426 68.5
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 6.3e-167 591.3 426 68.5
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-166 590.1 426 67.8
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.0e-165 586.3 429 66.2
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 5.9e-165 584.7 424 68.4
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.9e-165 584.7 432 65.3
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 7.8e-165 584.3 423 66.4
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.3e-164 582.8 423 65.5
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 3.8e-164 582.0 430 65.8
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 5.0e-164 581.6 448 64.3
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.0e-164 581.6 422 67.3
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.0e-164 581.6 422 67.3
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.6e-163 578.2 422 67.1
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 7.3e-163 577.8 414 67.1
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 9.5e-163 577.4 424 66.5
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.8e-162 575.9 434 64.3
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 3.6e-162 575.5 450 64.7
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 3.6e-162 575.5 415 67.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.4e-161 573.5 423 66.4
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 5.2e-161 571.6 421 66.3
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 2.6e-160 569.3 382 72.8
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 3.4e-160 568.9 446 64.6
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 2.9e-159 565.8 432 65.3
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 2.9e-159 565.8 447 64.7
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 6.4e-159 564.7 430 63.0
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 8.3e-159 564.3 447 63.3
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.1e-158 563.9 429 65.0
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.1e-158 563.9 446 64.1
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.9e-158 563.1 430 64.4
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.9e-158 563.1 445 61.6
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.9e-158 563.1 428 66.4
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 9.2e-158 560.8 430 64.0
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-157 560.5 431 65.2
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 2.7e-157 559.3 435 64.8
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 2.7e-157 559.3 435 64.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 7.8e-157 557.8 431 63.3
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.0e-156 557.4 430 64.7
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.7e-156 556.6 429 64.8
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 3.0e-156 555.8 446 61.9
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 9.5e-155 550.8 431 62.9
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 3.6e-154 548.9 424 64.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.4e-153 547.0 427 64.2
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.1e-153 545.8 407 67.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 5.2e-153 545.0 429 62.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 7.5e-152 541.2 430 64.0
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 2.9e-151 539.3 429 61.8
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.4e-150 536.2 402 66.4
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 5.4e-150 535.0 429 62.0
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 7.0e-150 534.6 429 61.5
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 2.1e-149 533.1 431 62.9
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 4.6e-149 531.9 451 62.7
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.3e-148 530.4 431 60.8
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.3e-148 530.4 440 60.2
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.3e-147 525.8 378 66.9
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.3e-147 525.8 431 62.4
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 3.3e-147 525.8 433 59.6
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 6.2e-146 521.5 374 66.6
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.1e-145 520.8 438 59.8
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 5.2e-145 518.5 431 61.5
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.2e-144 517.3 431 61.0
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.4e-144 515.8 434 58.5
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.7e-143 513.5 388 66.5
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 2.2e-143 513.1 440 60.5
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 6.4e-143 511.5 430 59.3
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 2.4e-142 509.6 449 59.2
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 3.2e-142 509.2 442 59.7
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 4.1e-142 508.8 431 61.0
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-141 506.9 349 68.8
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 2.7e-141 506.1 422 61.6
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.5e-141 505.8 451 59.0
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 4.6e-141 505.4 431 58.5
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 7.8e-141 504.6 422 62.6
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 7.8e-141 504.6 422 62.6
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 5.1e-140 501.9 436 59.4
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 6.6e-140 501.5 435 59.5
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 8.6e-140 501.1 349 67.9
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.9e-139 500.0 432 60.4
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.9e-139 500.0 435 59.5
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.5e-139 499.6 451 58.3
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 5.6e-139 498.4 380 63.2
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.2e-138 497.3 417 60.4
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.8e-138 496.1 430 59.5
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.8e-138 496.1 430 59.5
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.8e-137 493.4 347 68.3
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 4.0e-137 492.3 429 59.2
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.6e-136 489.6 435 58.2
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.9e-136 487.6 348 66.7
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.4e-134 483.8 429 58.3
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 6.0e-133 478.4 356 67.4
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 2.3e-132 476.5 367 63.8
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.2e-127 459.9 429 56.4
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.6e-122 443.7 321 67.3
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.0e-120 436.8 430 55.1
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.5e-117 426.0 329 66.0
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.1e-113 414.5 317 65.0
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.2e-104 384.4 428 48.8
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 3.8e-103 379.4 321 60.1
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 3.8e-103 379.4 321 60.1
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.9e-102 377.1 384 54.4
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 3.7e-98 362.8 389 50.9
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.9e-92 342.8 438 44.1
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 6.3e-82 308.9 226 66.8
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.5e-70 271.2 190 68.9
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.3e-66 258.1 387 40.8
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.1e-65 255.0 249 53.8
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.1e-62 245.0 163 71.2
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 6.6e-55 219.2 263 49.4
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.5e-54 218.0 161 64.0
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.7e-39 167.9 160 55.6
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.8e-35 152.9 109 65.1
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 8.6e-31 139.0 145 53.1
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.6e-29 134.8 109 64.2
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.4e-28 131.7 110 61.8
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 7.6e-27 125.9 99 57.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 4.9e-10 70.1 45 64.4
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 8.7e-07 59.3 67 44.8


User provided reference genes

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