Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 2.2e-67 258.8 130 100.0
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 3.5e-65 251.5 130 98.5
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 4.5e-65 251.1 130 97.7
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 3.5e-49 198.4 129 77.5
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 5.9e-49 197.6 127 80.3
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.7e-48 196.1 129 79.1
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 2.9e-48 195.3 130 77.7
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 6.6e-48 194.1 129 77.5
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 8.6e-48 193.7 129 78.3
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 8.6e-48 193.7 129 78.3
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 1.1e-47 193.4 129 76.0
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 1.1e-47 193.4 125 79.2
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 1.1e-47 193.4 130 77.7
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.1e-47 193.4 125 79.2
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 9.5e-47 190.3 129 77.5
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 1.2e-46 189.9 130 76.2
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 2.1e-46 189.1 130 76.2
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 2.8e-46 188.7 124 78.2
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 3.6e-46 188.3 130 76.2
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 3.6e-46 188.3 126 77.0
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 3.6e-46 188.3 119 79.0
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 8.0e-46 187.2 130 74.6
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 1.0e-45 186.8 126 76.2
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 1.0e-45 186.8 126 76.2
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 1.8e-45 186.0 130 74.6
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 1.8e-45 186.0 116 80.2
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 4.0e-45 184.9 124 76.6
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 5.2e-45 184.5 129 75.2
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 6.8e-45 184.1 130 74.6
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 6.8e-45 184.1 129 74.4
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 8.9e-45 183.7 107 82.2
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 8.9e-45 183.7 125 76.8
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 8.9e-45 183.7 129 75.2
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 8.9e-45 183.7 129 75.2
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 1.5e-44 183.0 129 74.4
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 2.6e-44 182.2 130 74.6
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 2.6e-44 182.2 124 76.6
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 3.4e-44 181.8 133 71.4
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 4.4e-44 181.4 115 77.4
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 5.8e-44 181.0 128 71.1
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 5.8e-44 181.0 129 74.4
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 9.8e-44 180.3 125 72.8
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 1.3e-43 179.9 116 79.3
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 1.3e-43 179.9 121 74.4
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 1.3e-43 179.9 129 74.4
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 2.2e-43 179.1 129 76.0
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 8.3e-43 177.2 131 72.5
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 1.1e-42 176.8 125 73.6
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 1.1e-42 176.8 129 73.6
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 1.4e-42 176.4 135 71.1
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.4e-42 176.4 131 74.0
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 1.9e-42 176.0 133 72.2
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 1.9e-42 176.0 143 63.6
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 2.4e-42 175.6 124 70.2
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 4.1e-42 174.9 129 69.0
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 4.1e-42 174.9 131 71.8
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 7.0e-42 174.1 111 75.7
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 9.2e-42 173.7 115 74.8
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 9.2e-42 173.7 128 71.9
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 1.2e-41 173.3 123 75.6
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 2.7e-41 172.2 120 75.0
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 4.6e-41 171.4 107 79.4
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 4.6e-41 171.4 125 73.6
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.7e-40 169.5 124 72.6
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.7e-40 169.5 131 70.2
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.3e-40 169.1 111 76.6
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 5.0e-40 167.9 133 69.9
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 5.0e-40 167.9 98 80.6
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 6.6e-40 167.5 91 85.7
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 8.6e-40 167.2 126 73.8
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.1e-39 166.8 124 71.8
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 2.5e-39 165.6 129 67.4
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 5.6e-39 164.5 91 85.7
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.2e-38 163.3 104 79.8
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 8.0e-38 160.6 118 72.9
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.4e-37 159.8 98 79.6
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 2.3e-37 159.1 89 85.4
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.3e-37 159.1 111 73.0
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 3.1e-37 158.7 143 59.4
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 6.8e-37 157.5 124 67.7
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 6.8e-37 157.5 107 72.0
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 8.9e-37 157.1 126 67.5
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 1.3e-35 153.3 85 82.4
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 2.4e-34 149.1 116 71.6
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 3.9e-32 141.7 163 49.1
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 1.1e-29 133.7 96 67.7
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 8.9e-29 130.6 101 67.3
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 2.6e-28 129.0 89 66.3
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 2.6e-28 129.0 85 80.0
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 1.6e-25 119.8 97 71.1
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.6e-25 119.8 109 65.1
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 2.5e-23 112.5 93 69.9
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 7.3e-23 110.9 91 71.4
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 3.8e-19 98.6 87 65.5
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 1.1e-18 97.1 83 66.3
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 1.1e-18 97.1 81 71.6
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 2.4e-18 95.9 99 63.6
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 5.4e-18 94.7 78 66.7
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 5.4e-18 94.7 78 66.7
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 2.3e-16 89.4 41 92.7
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 3.9e-16 88.6 71 69.0
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 1.3e-14 83.6 58 69.0
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 2.4e-13 79.3 54 74.1
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 6.9e-13 77.8 83 61.4
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 9.0e-13 77.4 86 58.1
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 3.0e-08 62.4 42 69.0
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 8.1e-06 54.3 87 43.7


User provided reference genes

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