Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 2.4e-221 771.9 401 100.0
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 4.0e-197 691.4 436 87.2
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 8.5e-163 577.4 343 88.3
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 1.1e-162 577.0 407 77.9
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.3e-158 563.5 403 77.4
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.0e-152 543.9 404 74.8
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 1.2e-137 493.8 408 66.7
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 2.6e-135 486.1 403 66.0
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 4.4e-135 485.3 409 65.8
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 9.2e-133 477.6 413 66.1
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 2.0e-132 476.5 418 65.6
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.0e-132 476.5 412 64.8
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 2.7e-132 476.1 414 66.4
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 2.7e-132 476.1 404 64.6
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 7.8e-132 474.6 401 65.3
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 1.7e-131 473.4 408 65.9
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 3.0e-131 472.6 412 66.3
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 3.0e-131 472.6 403 65.0
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 6.6e-131 471.5 404 64.1
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 6.6e-131 471.5 428 63.6
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.9e-130 469.9 407 64.9
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 1.9e-130 469.9 413 63.9
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 2.5e-130 469.5 410 66.6
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 2.5e-130 469.5 410 65.1
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 9.5e-130 467.6 410 64.4
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 2.8e-129 466.1 403 65.8
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 8.0e-129 464.5 413 63.4
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.0e-128 464.2 426 63.1
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 1.0e-128 464.2 403 64.8
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 1.8e-128 463.4 406 65.3
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 2.3e-128 463.0 404 63.9
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.3e-128 463.0 428 61.9
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 6.8e-128 461.5 410 62.2
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.5e-127 460.3 413 63.0
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 2.0e-127 459.9 413 63.0
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 2.0e-127 459.9 413 63.9
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.0e-127 459.9 426 62.2
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.0e-127 459.9 428 61.7
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 2.0e-127 459.9 428 60.5
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 5.8e-127 458.4 410 63.4
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 1.3e-126 457.2 362 69.9
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.7e-126 456.8 424 62.7
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 1.9e-125 453.4 409 62.3
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 2.4e-125 453.0 403 63.8
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 3.2e-125 452.6 417 61.6
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 1.2e-124 450.7 402 63.7
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 2.0e-124 449.9 405 64.0
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 2.0e-124 449.9 422 61.6
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 3.5e-124 449.1 362 67.1
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 6.0e-124 448.4 403 63.3
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 3.9e-123 445.7 421 60.8
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 5.6e-122 441.8 413 61.5
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 7.3e-122 441.4 407 62.2
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 4.7e-121 438.7 412 62.1
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 1.4e-120 437.2 427 58.8
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.8e-120 436.8 409 61.6
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 6.8e-120 434.9 403 61.3
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 1.2e-119 434.1 365 66.6
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.5e-119 433.7 405 62.0
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 2.6e-119 433.0 407 61.2
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 7.5e-119 431.4 429 60.1
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 9.8e-119 431.0 432 57.2
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 2.9e-118 429.5 435 58.4
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.9e-118 429.5 429 59.9
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.7e-118 429.1 429 59.7
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 8.3e-118 427.9 435 59.1
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 1.1e-117 427.6 426 58.9
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 1.1e-117 427.6 425 58.1
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 2.4e-117 426.4 408 61.3
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 2.4e-117 426.4 413 59.6
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 3.2e-117 426.0 405 59.3
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 7.1e-117 424.9 426 57.3
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 9.2e-117 424.5 433 58.9
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 2.1e-116 423.3 402 59.7
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 7.8e-116 421.4 422 58.8
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.3e-115 420.6 422 58.8
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 3.9e-115 419.1 440 56.1
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 5.1e-115 418.7 432 57.2
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 5.1e-115 418.7 407 58.5
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 6.6e-115 418.3 431 58.2
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 3.3e-114 416.0 405 59.3
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 9.5e-114 414.5 527 51.0
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 1.6e-113 413.7 381 63.0
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.1e-112 411.0 401 58.9
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 4.0e-112 409.1 406 58.6
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 2.6e-111 406.4 336 65.8
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 5.8e-111 405.2 446 55.4
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 1.3e-110 404.1 438 56.2
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 6.4e-110 401.7 418 56.2
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 3.2e-109 399.4 401 57.6
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 1.0e-107 394.4 426 54.2
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 8.6e-107 391.3 426 54.2
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 1.1e-106 391.0 353 62.9
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.9e-106 390.2 426 54.0
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 2.4e-104 383.3 430 54.2
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 1.3e-97 360.9 407 54.8
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 6.2e-97 358.6 421 51.1
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 7.4e-90 335.1 358 55.3
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 3.6e-89 332.8 329 57.8
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 1.5e-87 327.4 321 59.8
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 3.4e-87 326.2 339 53.4
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 4.2e-85 319.3 314 59.6
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 9.6e-82 308.1 400 47.0
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 2.1e-81 307.0 271 62.0
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 9.6e-74 281.6 317 54.6
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.6e-73 280.8 267 56.9
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 5.9e-71 272.3 412 42.7
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 8.5e-70 268.5 334 47.9
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 5.9e-63 245.7 211 64.0
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.5e-61 240.4 298 51.7
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 8.8e-51 205.3 389 37.0
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 1.9e-45 187.6 263 49.4
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 1.8e-40 171.0 198 52.0
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.3e-38 164.9 138 65.2
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 4.0e-35 153.3 88 80.7
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 2.0e-23 114.4 484 25.8
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 1.1e-21 108.6 364 28.8
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 4.9e-17 93.2 87 57.5
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 2.7e-15 87.4 145 47.6
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.0e-10 71.2 53 58.5
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 7.5e-10 69.3 47 68.1
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-09 68.6 47 66.0
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 1.3e-09 68.6 326 25.5
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 2.2e-09 67.8 174 32.2


User provided reference genes

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