Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044990 Cucumis sativus L. HOM05D001182 ORTHO05D008051 2.6e-71 271.9 138 100.0
MELO3C010089.2 Cucumis melo HOM05D001182 ORTHO05D008051 2.6e-47 192.2 137 74.5
CsaV3_1G044980 Cucumis sativus L. HOM05D001182 ORTHO05D008051 1.1e-16 90.5 40 97.5
ClCG09G013930 Citrullus lanatus HOM05D001182 ORTHO05D008051 1.4e-16 90.1 40 95.0
Sed0008850 Sechium edule HOM05D001182 ORTHO05D008051 3.5e-15 85.5 42 85.7
FAN08G2833 Fragaria x ananassa HOM05D001182 ORTHO05D008051 8.6e-14 80.9 38 84.2
Gohir.A03G211100 Gossypium hirsutum HOM05D001182 ORTHO05D008051 8.6e-14 80.9 48 64.6
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 2.5e-13 79.3 40 80.0
Duzib132G0224 Durio zibethinus HOM05D001182 ORTHO05D008051 2.5e-13 79.3 48 66.7
ECA234G2900 Erigeron canadensis HOM05D001182 ORTHO05D008051 2.5e-13 79.3 40 80.0
HanXRQChr03g0066821 Helianthus annuus HOM05D001182 ORTHO05D008051 2.5e-13 79.3 40 80.0
Gorai.005G260500 Gossypium raimondii HOM05D001182 ORTHO05D008051 3.3e-13 79.0 48 64.6
Hma1.2p1_0557F.1_g178390 Hydrangea macrophylla HOM05D001182 ORTHO05D008051 3.3e-13 79.0 38 84.2
FvH4_5g29650 Fragaria vesca HOM05D001182 ORTHO05D008051 4.3e-13 78.6 37 83.8
FAN04G2731 Fragaria x ananassa HOM05D001182 ORTHO05D008051 4.3e-13 78.6 37 83.8
HanXRQChr16g0513941 Helianthus annuus HOM05D001182 ORTHO05D008051 4.3e-13 78.6 40 77.5
MD08G1227800 Malus domestica HOM05D001182 ORTHO05D008051 4.3e-13 78.6 37 83.8
Thecc.02G039700 Theobroma cacao HOM05D001182 ORTHO05D008051 4.3e-13 78.6 48 66.7
Prupe.1G566800 Prunus persica HOM05D001182 ORTHO05D008051 7.3e-13 77.8 97 44.3
Lsat_1_v5_gn_5_109401 Lactuca sativa HOM05D001182 ORTHO05D008051 1.2e-12 77.0 39 79.5
Lsat_1_v5_gn_9_118280 Lactuca sativa HOM05D001182 ORTHO05D008051 1.2e-12 77.0 39 79.5
Atru.chr6.839_Atru.chr6.840 Acer truncatum HOM05D001182 ORTHO05D008051 1.6e-12 76.6 37 81.1
Cpa.g.sc113.70 Carica papaya HOM05D001182 ORTHO05D008051 2.1e-12 76.3 39 79.5
CDE04G0254 Ceratophyllum demersum HOM05D001182 ORTHO05D008051 2.1e-12 76.3 39 79.5
ECA240G2723 Erigeron canadensis HOM05D001182 ORTHO05D008051 2.1e-12 76.3 39 74.4
Glyma.08G185700 Glycine max HOM05D001182 ORTHO05D008051 2.1e-12 76.3 37 81.1
Glyma.15G047100 Glycine max HOM05D001182 ORTHO05D008051 2.1e-12 76.3 37 81.1
Lalb_Chr15g0090641 Lupinus albus HOM05D001182 ORTHO05D008051 2.1e-12 76.3 37 81.1
MBI09_g06383_MAGBIO Magnolia biondii HOM05D001182 ORTHO05D008051 2.1e-12 76.3 41 73.2
Phvul.006G214050 Phaseolus vulgaris HOM05D001182 ORTHO05D008051 2.1e-12 76.3 37 81.1
RcHm_v2.0_Chr7g0222711 Rosa chinensis HOM05D001182 ORTHO05D008051 2.1e-12 76.3 37 81.1
QL11p000326 Quercus lobata HOM05D001182 ORTHO05D008051 2.8e-12 75.9 42 66.7
TAR628G0505 Trochodendron aralioides HOM05D001182 ORTHO05D008051 2.8e-12 75.9 38 81.6
Cfa005531 Carpinus fangiana HOM05D001182 ORTHO05D008051 3.6e-12 75.5 50 68.0
Haze_01650 Corylus avellana HOM05D001182 ORTHO05D008051 3.6e-12 75.5 51 62.7
Dinv24265 Davidia involucrata HOM05D001182 ORTHO05D008051 3.6e-12 75.5 64 54.7
Gohir.D02G232700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 3.6e-12 75.5 48 64.6
Manes.07G014700 Manihot esculenta HOM05D001182 ORTHO05D008051 3.6e-12 75.5 37 81.1
Potri.001G210200 Populus trichocarpa HOM05D001182 ORTHO05D008051 3.6e-12 75.5 56 58.9
CSS0017219 Camellia sinensis var. sinensis HOM05D001182 ORTHO05D008051 4.7e-12 75.1 37 83.8
DCAR_013991 Daucus carota HOM05D001182 ORTHO05D008051 4.7e-12 75.1 38 81.6
MD15G1421600 Malus domestica HOM05D001182 ORTHO05D008051 4.7e-12 75.1 37 78.4
arahy.Tifrunner.gnm1.ann1.SMR6SK Arachis hypogaea HOM05D001182 ORTHO05D008051 6.2e-12 74.7 38 76.3
arahy.Tifrunner.gnm1.ann1.UK23IF Arachis hypogaea HOM05D001182 ORTHO05D008051 6.2e-12 74.7 38 76.3
Medtr2g007330 Medicago truncatula HOM05D001182 ORTHO05D008051 6.2e-12 74.7 37 78.4
TPR.G2100 Trifolium pratense HOM05D001182 ORTHO05D008051 6.2e-12 74.7 37 78.4
Ca_00081_v3 Cicer arietinum L. HOM05D001182 ORTHO05D008051 8.1e-12 74.3 37 75.7
CiPaw.06G148200 Carya illinoinensis HOM05D001182 ORTHO05D008051 1.1e-11 73.9 41 70.7
ATR0584G139 Amborella trichopoda HOM05D001182 ORTHO05D008051 1.4e-11 73.6 62 51.6
Nn1g08676 Nelumbo nucifera HOM05D001182 ORTHO05D008051 1.4e-11 73.6 64 50.0
Psat1g224520 Pisum sativum HOM05D001182 ORTHO05D008051 1.4e-11 73.6 37 75.7
PGR042G0576 Punica granatum HOM05D001182 ORTHO05D008051 1.4e-11 73.6 45 64.4
Ciclev10000484m.g Citrus clementina HOM05D001182 ORTHO05D008051 1.8e-11 73.2 40 72.5
Lj9A307T42 Lonicera japonica HOM05D001182 ORTHO05D008051 1.8e-11 73.2 37 75.7
Oeu008885.2 Olea europaea HOM05D001182 ORTHO05D008051 1.8e-11 73.2 37 75.7
Rhsim11G0130000 Rhododendron simsii HOM05D001182 ORTHO05D008051 2.3e-11 72.8 39 74.4
VMungo0540G0659 Vigna mungo HOM05D001182 ORTHO05D008051 2.3e-11 72.8 37 78.4
Eucgr.G00608 Eucalyptus grandis HOM05D001182 ORTHO05D008051 3.1e-11 72.4 54 57.4
Nn5g28124 Nelumbo nucifera HOM05D001182 ORTHO05D008051 3.1e-11 72.4 37 81.1
SalBow6G4578 Salvia bowleyana HOM05D001182 ORTHO05D008051 3.1e-11 72.4 37 75.7
SalBow6G5030 Salvia bowleyana HOM05D001182 ORTHO05D008051 3.1e-11 72.4 37 75.7
GSVIVG01022994001 Vitis vinifera HOM05D001182 ORTHO05D008051 3.1e-11 72.4 37 73.0
EL10Ac9g22713 Beta vulgaris HOM05D001182 ORTHO05D008051 4.0e-11 72.0 39 71.8
CANSAT54G1880 Cannabis sativa HOM05D001182 ORTHO05D008051 4.0e-11 72.0 61 50.8
Cc02_g22390 Coffea canephora HOM05D001182 ORTHO05D008051 4.0e-11 72.0 99 40.4
Migut.N01040 Erythranthe guttata HOM05D001182 ORTHO05D008051 4.0e-11 72.0 62 53.2
SGA_v2.0_scaffold145G36071 Striga asiatica HOM05D001182 ORTHO05D008051 4.0e-11 72.0 37 75.7
Ah.01g002710 Amaranthus hybridus HOM05D001182 ORTHO05D008051 5.2e-11 71.6 39 71.8
THA.LOC104800080 Tarenaya hassleriana HOM05D001182 ORTHO05D008051 5.2e-11 71.6 37 78.4
Dinv19358 Davidia involucrata HOM05D001182 ORTHO05D008051 6.8e-11 71.2 62 53.2
vmacro01766 Vaccinium macrocarpon HOM05D001182 ORTHO05D008051 6.8e-11 71.2 78 48.7
HPP92_001083 Vanilla planifolia HOM05D001182 ORTHO05D008051 6.8e-11 71.2 40 67.5
CARHR064540 Cardamine hirsuta HOM05D001182 ORTHO05D008051 8.9e-11 70.9 62 50.0
Lj6g0002068 Lotus japonicus HOM05D001182 ORTHO05D008051 8.9e-11 70.9 37 73.0
TWI14G1019 Tripterygium wilfordii HOM05D001182 ORTHO05D008051 8.9e-11 70.9 37 73.0
AL2G30850 Arabidopsis lyrata HOM05D001182 ORTHO05D008051 1.2e-10 70.5 37 73.0
Gohir.A01G177900 Gossypium hirsutum HOM05D001182 ORTHO05D008051 1.2e-10 70.5 37 78.4
Gohir.D01G168700 Gossypium hirsutum HOM05D001182 ORTHO05D008051 1.2e-10 70.5 37 78.4
Gorai.002G209500 Gossypium raimondii HOM05D001182 ORTHO05D008051 1.2e-10 70.5 37 78.4
Actinidia00212 Actinidia chinensis HOM05D001182 ORTHO05D008051 1.5e-10 70.1 64 50.0
Aqoxy5G02433 Aquilegia oxysepala HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 69.2
BcaB03g14882 Brassica carinata HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 66.7
BcaC08g46560 Brassica carinata HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 66.7
A07p37600 Brassica napus HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 66.7
C06p45360 Brassica napus HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 66.7
BolC6t39592H Brassica oleracea HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 66.7
BraA07t31321Z Brassica rapa HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 66.7
AUR62017507 Chenopodium quinoa HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 64.1
PSO017G4704 Papaver somniferum HOM05D001182 ORTHO05D008051 2.0e-10 69.7 42 66.7
PSO170G3364 Papaver somniferum HOM05D001182 ORTHO05D008051 2.0e-10 69.7 39 69.2
AT1G71240 Arabidopsis thaliana HOM05D001182 ORTHO05D008051 2.6e-10 69.3 37 70.3
Carub.0002s1812 Capsella rubella HOM05D001182 ORTHO05D008051 2.6e-10 69.3 37 70.3
Peaxi162Scf00011g00358 Petunia axillaris HOM05D001182 ORTHO05D008051 2.6e-10 69.3 37 73.0
Sp5g26440 Schrenkiella parvula HOM05D001182 ORTHO05D008051 2.6e-10 69.3 37 70.3
MSTRG.5232 Avicennia marina HOM05D001182 ORTHO05D008051 3.4e-10 68.9 36 72.2
AUR62015048 Chenopodium quinoa HOM05D001182 ORTHO05D008051 3.4e-10 68.9 39 64.1
Os01g0869000 Oryza sativa ssp. japonica HOM05D001182 ORTHO05D008051 3.4e-10 68.9 61 50.8
Sopen01g046740 Solanum pennellii HOM05D001182 ORTHO05D008051 4.4e-10 68.6 37 73.0
Aa31LG4G9270 Aethionema arabicum HOM05D001182 ORTHO05D008051 5.8e-10 68.2 37 67.6
Thhalv10018126m.g Eutrema salsugineum HOM05D001182 ORTHO05D008051 5.8e-10 68.2 37 67.6
unitig_52.g17436 Utricularia gibba HOM05D001182 ORTHO05D008051 7.5e-10 67.8 37 70.3
Nitab4.5_0002245g0160 Nicotiana tabacum HOM05D001182 ORTHO05D008051 1.7e-09 66.6 37 70.3
Nitab4.5_0011195g0030 Nicotiana tabacum HOM05D001182 ORTHO05D008051 1.7e-09 66.6 37 70.3
Solyc01g104300.3 Solanum lycopersicum HOM05D001182 ORTHO05D008051 1.7e-09 66.6 37 70.3
CAN.G1577.8 Capsicum annuum HOM05D001182 ORTHO05D008051 2.2e-09 66.2 37 70.3
AagrBONN_evm.TU.Sc2ySwM_117.531 Anthoceros agrestis HOM05D001182 ORTHO05D008051 1.9e-08 63.2 38 57.9
SMO117G0194 Selaginella moellendorffii HOM05D001182 ORTHO05D008051 1.9e-08 63.2 38 52.6
Mapoly0004s0069 Marchantia polymorpha HOM05D001182 ORTHO05D008051 7.1e-08 61.2 38 57.9
Pp3c17_20110 Physcomitrium patens HOM05D001182 ORTHO05D008051 2.1e-07 59.7 64 42.2
Sc21g0000760 Simmondsia chinensis HOM05D001182 ORTHO05D008051 1.3e-06 57.0 37 62.2
Pp3c14_16340 Physcomitrium patens HOM05D001182 ORTHO05D008051 6.6e-06 54.7 37 51.4


User provided reference genes

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