Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 8.7e-108 393.7 201 100.0
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.6e-85 319.7 233 76.8
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.7e-85 318.9 233 77.7
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.2e-67 260.4 293 55.6
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 1.1e-65 253.8 225 63.6
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.6e-29 133.7 113 66.4
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 2.8e-29 132.9 113 66.4
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 8.1e-29 131.3 113 65.5
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.8e-28 130.2 113 64.6
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 2.4e-28 129.8 225 42.2
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 4.0e-28 129.0 113 63.7
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 4.0e-28 129.0 216 44.4
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.2e-28 128.6 113 64.6
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.2e-27 127.5 163 49.1
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.2e-27 127.5 163 49.1
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 2.0e-27 126.7 119 62.2
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 2.6e-27 126.3 134 56.0
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 2.6e-27 126.3 203 43.3
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 3.4e-27 125.9 116 61.2
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 7.6e-27 124.8 205 44.9
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 9.9e-27 124.4 113 61.9
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 2.2e-26 123.2 225 41.3
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.2e-26 123.2 205 44.4
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 2.2e-26 123.2 122 59.0
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 3.8e-26 122.5 201 44.8
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 1.1e-25 120.9 143 52.4
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 9.2e-25 117.9 118 59.3
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.6e-24 117.1 206 40.8
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 2.7e-24 116.3 112 60.7
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 4.6e-24 115.5 203 43.3
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 6.0e-24 115.2 206 40.3
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.0e-23 114.4 113 62.8
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 1.3e-23 114.0 210 40.5
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 3.0e-23 112.8 117 58.1
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 3.0e-23 112.8 111 61.3
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 3.9e-23 112.5 112 58.9
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 5.1e-23 112.1 113 59.3
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 6.6e-23 111.7 113 59.3
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 6.6e-23 111.7 106 59.4
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 8.7e-23 111.3 127 55.1
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 8.7e-23 111.3 117 54.7
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 1.5e-22 110.5 115 58.3
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.5e-22 110.5 120 57.5
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 1.5e-22 110.5 132 53.0
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 2.5e-22 109.8 152 48.0
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 2.5e-22 109.8 120 56.7
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 2.5e-22 109.8 113 56.6
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 3.3e-22 109.4 127 51.2
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 3.3e-22 109.4 136 50.0
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 5.6e-22 108.6 127 51.2
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 5.6e-22 108.6 124 53.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 5.6e-22 108.6 111 55.9
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 5.6e-22 108.6 128 55.5
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 9.6e-22 107.8 106 58.5
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.2e-21 107.5 118 55.9
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.2e-21 107.5 111 58.6
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 1.6e-21 107.1 173 41.6
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.6e-21 107.1 127 51.2
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 3.6e-21 105.9 210 41.9
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 3.6e-21 105.9 133 51.1
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 4.7e-21 105.5 108 60.2
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 6.2e-21 105.1 112 58.0
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 6.2e-21 105.1 108 60.2
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 6.2e-21 105.1 134 51.5
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 8.1e-21 104.8 134 52.2
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 8.1e-21 104.8 134 51.5
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 8.1e-21 104.8 134 51.5
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 8.1e-21 104.8 113 55.8
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 1.4e-20 104.0 133 50.4
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.4e-20 104.0 168 44.0
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 1.8e-20 103.6 221 41.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.8e-20 103.6 128 51.6
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.8e-20 103.6 112 58.9
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 2.4e-20 103.2 228 38.2
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 5.3e-20 102.1 181 42.5
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.2e-19 100.9 209 38.8
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 1.5e-19 100.5 166 46.4
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.6e-19 99.8 139 48.2
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.6e-19 99.8 139 48.2
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 3.4e-19 99.4 126 50.0
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 3.4e-19 99.4 125 50.4
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 3.4e-19 99.4 127 52.8
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 4.4e-19 99.0 122 50.0
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 5.8e-19 98.6 126 51.6
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 9.9e-19 97.8 163 42.9
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.7e-18 97.1 135 46.7
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 3.8e-18 95.9 209 38.3
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 4.9e-18 95.5 191 39.8
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 8.4e-18 94.7 112 50.0
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.4e-17 94.0 114 54.4
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.2e-16 90.9 180 38.9
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.6e-16 90.5 117 50.4
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 1.6e-16 90.5 134 45.5
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 3.0e-15 86.3 184 38.6
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 5.1e-15 85.5 67 67.2
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 8.7e-15 84.7 79 59.5
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 2.5e-14 83.2 172 36.0
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.3e-14 81.6 137 44.5
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 9.6e-14 81.3 55 72.7
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 9.6e-14 81.3 114 47.4
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 3.6e-13 79.3 175 39.4
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.8e-12 77.0 98 50.0
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.8e-12 77.0 77 51.9
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 4.5e-11 72.4 109 45.0
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 4.5e-11 72.4 78 52.6
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 2.4e-09 66.6 78 56.4
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.3e-07 60.8 109 45.0
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 1.1e-06 57.8 37 81.1


User provided reference genes

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