Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 6.1e-36 153.7 80 100.0
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 5.1e-27 124.0 75 88.0
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 2.0e-18 95.5 75 72.0
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 1.4e-11 72.8 71 52.1
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 2.3e-11 72.0 71 52.1
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 3.0e-11 71.6 70 55.7
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 3.0e-11 71.6 63 60.3
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 6.7e-11 70.5 70 55.7
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 1.1e-10 69.7 48 68.8
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 1.5e-10 69.3 76 51.3
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 2.0e-10 68.9 69 55.1
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 2.6e-10 68.6 64 57.8
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 2.6e-10 68.6 67 56.7
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 2.6e-10 68.6 59 61.0
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 3.3e-10 68.2 76 48.7
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 3.3e-10 68.2 67 56.7
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 3.3e-10 68.2 67 56.7
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 3.3e-10 68.2 64 57.8
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 5.7e-10 67.4 71 56.3
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 1.7e-09 65.9 71 52.1
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 2.8e-09 65.1 67 52.2
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 2.8e-09 65.1 63 57.1
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 3.7e-09 64.7 70 52.9
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 3.7e-09 64.7 40 77.5
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 3.7e-09 64.7 71 53.5
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 4.8e-09 64.3 69 50.7
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 4.8e-09 64.3 71 52.1
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 4.8e-09 64.3 71 52.1
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 4.8e-09 64.3 71 52.1
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 8.2e-09 63.5 43 62.8
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 8.2e-09 63.5 40 67.5
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 8.2e-09 63.5 36 80.6
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 1.1e-08 63.2 49 63.3
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 1.1e-08 63.2 44 61.4
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.4e-08 62.8 63 55.6
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 1.8e-08 62.4 45 57.8
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 1.8e-08 62.4 69 52.2
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.8e-08 62.4 79 49.4
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.4e-08 62.0 40 70.0
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 2.4e-08 62.0 46 63.0
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 3.1e-08 61.6 60 56.7
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 3.1e-08 61.6 47 59.6
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 3.1e-08 61.6 66 53.0
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 5.3e-08 60.8 66 48.5
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 5.3e-08 60.8 40 67.5
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 7.0e-08 60.5 64 50.0
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 9.1e-08 60.1 71 49.3
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 9.1e-08 60.1 68 47.1
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 9.1e-08 60.1 73 42.5
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 1.2e-07 59.7 70 48.6
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 2.0e-07 58.9 38 65.8
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 2.7e-07 58.5 40 65.0
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 2.7e-07 58.5 48 62.5
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 3.5e-07 58.2 67 49.3
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 3.5e-07 58.2 63 47.6
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 3.5e-07 58.2 40 62.5
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 3.5e-07 58.2 64 48.4
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 4.5e-07 57.8 50 54.0
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 5.9e-07 57.4 68 51.5
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 5.9e-07 57.4 45 62.2
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 7.7e-07 57.0 75 45.3
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 1.0e-06 56.6 70 45.7
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.3e-06 56.2 76 42.1
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 1.3e-06 56.2 71 43.7
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 1.3e-06 56.2 71 43.7
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 1.7e-06 55.8 40 60.0
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.7e-06 55.8 66 42.4
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 1.7e-06 55.8 67 43.3
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 2.9e-06 55.1 51 51.0
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 2.9e-06 55.1 51 51.0
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 3.8e-06 54.7 48 54.2
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 5.0e-06 54.3 40 57.5
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 5.0e-06 54.3 37 62.2
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 5.0e-06 54.3 33 66.7
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 6.5e-06 53.9 37 59.5
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 8.5e-06 53.5 65 47.7
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 8.5e-06 53.5 57 43.9
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 8.5e-06 53.5 68 39.7
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 8.5e-06 53.5 63 47.6


User provided reference genes

Program Settings