Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 4.6e-169 597.8 301 100.0
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 2.0e-164 582.4 301 97.3
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.3e-144 516.5 301 87.0
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 3.9e-104 382.1 299 68.2
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 2.8e-102 375.9 297 65.7
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 8.2e-102 374.4 302 66.9
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 2.4e-101 372.9 301 65.4
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 5.3e-101 371.7 298 64.8
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 9.1e-101 370.9 292 65.4
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 2.0e-100 369.8 289 68.2
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 2.0e-100 369.8 302 66.9
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 7.7e-100 367.9 300 66.7
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.0e-99 367.5 292 64.7
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.7e-99 366.7 298 65.4
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 2.2e-99 366.3 294 64.6
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 3.8e-99 365.5 294 65.6
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.2e-98 362.5 301 66.4
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 9.4e-98 360.9 298 64.4
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 9.4e-98 360.9 298 64.4
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 2.1e-97 359.8 302 65.9
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 2.1e-97 359.8 296 65.2
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 4.7e-97 358.6 296 63.5
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 1.4e-96 357.1 301 64.1
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.5e-95 353.6 295 64.1
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 1.5e-95 353.6 293 61.8
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 4.4e-95 352.1 297 61.6
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 4.4e-95 352.1 297 65.0
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 4.4e-95 352.1 282 64.2
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 9.7e-95 350.9 295 64.4
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 3.7e-94 349.0 287 64.8
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.1e-93 347.4 298 63.1
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 1.4e-93 347.1 316 61.4
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.2e-92 344.0 297 62.6
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 2.6e-92 342.8 281 61.6
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 3.5e-92 342.4 306 62.7
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 4.5e-92 342.0 281 61.6
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 2.2e-91 339.7 297 62.6
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 2.9e-91 339.3 294 61.2
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 3.8e-91 339.0 297 61.6
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 5.0e-91 338.6 297 61.3
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 6.5e-91 338.2 296 60.1
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 8.5e-91 337.8 302 60.6
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 1.5e-90 337.0 294 62.2
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 1.5e-90 337.0 282 62.1
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 3.2e-90 335.9 295 64.4
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.2e-90 335.9 309 60.8
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 5.5e-90 335.1 260 66.2
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 5.5e-90 335.1 282 62.8
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 5.5e-90 335.1 284 59.9
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 5.5e-90 335.1 292 63.0
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 1.2e-89 334.0 343 55.4
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 1.6e-89 333.6 302 59.9
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 2.1e-89 333.2 302 59.9
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 2.1e-89 333.2 300 60.7
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 3.6e-89 332.4 285 61.8
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 4.7e-89 332.0 282 62.4
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 6.1e-89 331.6 302 61.6
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 6.1e-89 331.6 313 59.4
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 1.0e-88 330.9 295 60.0
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.4e-88 330.5 297 59.3
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.8e-88 330.1 279 60.9
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 2.3e-88 329.7 285 59.6
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 3.0e-88 329.3 298 59.1
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 4.0e-88 328.9 279 59.9
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 1.2e-87 327.4 281 61.2
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 2.6e-87 326.2 297 60.6
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 3.3e-87 325.9 295 61.4
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 3.3e-87 325.9 286 59.1
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 3.3e-87 325.9 296 59.8
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 7.5e-87 324.7 287 60.3
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 9.7e-87 324.3 294 60.2
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 1.7e-86 323.6 294 60.2
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 4.8e-86 322.0 290 57.9
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 1.4e-85 320.5 329 55.9
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 2.4e-85 319.7 292 61.6
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 2.4e-85 319.7 292 58.2
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 3.1e-85 319.3 288 61.5
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 5.3e-85 318.5 303 59.7
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 9.1e-85 317.8 321 56.7
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.3e-83 313.9 291 59.5
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 1.7e-83 313.5 292 56.8
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 2.2e-83 313.2 274 59.9
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 2.9e-83 312.8 302 55.6
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 5.0e-83 312.0 250 62.4
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 7.2e-82 308.1 296 57.8
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 7.2e-82 308.1 258 62.0
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 9.4e-82 307.8 273 58.2
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.4e-80 303.9 295 58.3
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 5.7e-79 298.5 311 54.3
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 7.0e-77 291.6 299 53.8
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 1.3e-75 287.3 291 52.9
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.1e-74 284.3 291 55.7
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 1.9e-74 283.5 294 55.4
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 4.7e-73 278.9 292 53.4
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 1.3e-70 270.8 222 59.5
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.7e-70 269.2 235 60.9
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 7.0e-69 265.0 301 53.5
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 2.1e-65 253.4 287 49.5
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 6.0e-60 235.3 201 59.7
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 3.1e-56 223.0 184 60.9
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 4.4e-55 219.2 123 91.9
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 7.5e-55 218.4 302 44.7
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 7.0e-53 211.8 298 45.0
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 8.6e-51 204.9 192 58.3
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.3e-48 196.8 148 73.6
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 1.7e-46 190.7 184 57.1
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.9e-46 189.9 289 40.1
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 6.4e-46 188.7 130 75.4
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 1.4e-45 187.6 131 74.0
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 7.1e-45 185.3 138 65.2
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 9.2e-45 184.9 246 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.0e-43 181.4 264 39.8
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 6.8e-40 168.7 211 46.0
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 8.9e-40 168.3 181 54.7
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.0e-39 167.2 293 39.6
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 9.9e-39 164.9 312 35.3
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 3.2e-37 159.8 148 57.4
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.2e-36 157.9 149 55.0
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.1e-33 147.1 106 71.7
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 1.4e-32 144.4 106 74.5
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 7.6e-31 138.7 151 54.3
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 7.3e-26 122.1 153 47.7
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 3.1e-24 116.7 95 57.9
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.2e-23 114.8 79 73.4
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 2.4e-21 107.1 86 69.8
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 1.2e-20 104.8 93 59.1
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 1.2e-20 104.8 293 33.4
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.8e-17 93.6 101 55.4
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 5.3e-16 89.4 99 55.6
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 9.0e-16 88.6 233 32.2
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 3.5e-12 76.6 83 55.4
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 1.5e-07 61.2 147 34.0


User provided reference genes

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