Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.3e-96 356.3 175 100.0
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 7.7e-84 313.9 162 95.1
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 4.6e-81 304.7 158 96.2
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 5.5e-74 281.2 158 88.6
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 4.5e-68 261.5 155 80.6
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.9e-66 256.1 163 77.9
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 1.2e-65 253.4 158 77.8
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.1e-65 252.7 158 77.2
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 2.7e-65 252.3 158 75.3
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 8.0e-65 250.8 159 76.7
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.9e-64 248.4 163 74.8
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 5.2e-64 248.1 161 75.8
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.1e-63 246.9 169 72.8
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.0e-63 246.1 154 76.6
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 3.3e-63 245.4 161 75.8
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 3.3e-63 245.4 163 74.2
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 3.3e-63 245.4 167 72.5
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 5.7e-63 244.6 163 73.6
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.3e-62 243.4 163 73.6
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.7e-62 243.0 158 75.9
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.7e-62 241.9 163 73.0
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 6.3e-62 241.1 154 76.0
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 8.2e-62 240.7 163 72.4
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 1.1e-61 240.4 164 72.6
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 2.4e-61 239.2 163 71.8
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 2.4e-61 239.2 157 73.9
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.5e-60 235.0 165 70.3
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 4.5e-60 235.0 163 71.2
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 4.5e-60 235.0 203 60.6
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 4.5e-60 235.0 163 70.6
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 7.7e-60 234.2 159 70.4
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.0e-59 233.8 165 70.3
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.0e-59 233.8 159 69.8
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 1.0e-59 233.8 151 75.5
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 2.2e-59 232.6 164 68.3
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 5.0e-59 231.5 158 69.0
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 1.9e-58 229.6 163 68.7
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 2.5e-58 229.2 155 70.3
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.2e-57 226.9 165 70.9
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 2.1e-57 226.1 165 66.7
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 2.7e-57 225.7 161 71.4
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 4.7e-57 224.9 158 70.3
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 6.1e-57 224.6 169 68.0
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 8.0e-57 224.2 152 71.1
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 8.0e-57 224.2 149 69.8
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.0e-56 223.8 158 69.6
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 1.8e-56 223.0 160 70.0
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 2.6e-55 219.2 147 68.7
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 2.6e-55 219.2 165 69.7
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 3.4e-55 218.8 165 66.1
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 5.7e-55 218.0 153 66.0
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 5.7e-55 218.0 158 66.5
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 5.7e-55 218.0 154 67.5
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 9.8e-55 217.2 153 66.0
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.7e-54 216.5 144 68.1
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.7e-54 216.5 149 67.8
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 2.2e-54 216.1 144 69.4
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 2.2e-54 216.1 149 67.8
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.2e-54 216.1 155 65.8
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 2.8e-54 215.7 153 66.0
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.8e-54 215.7 157 68.2
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 3.7e-54 215.3 153 65.4
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 3.7e-54 215.3 153 65.4
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 3.7e-54 215.3 163 66.3
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 4.8e-54 214.9 151 70.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 4.8e-54 214.9 166 67.5
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 6.3e-54 214.5 151 70.2
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 6.3e-54 214.5 147 68.0
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 6.3e-54 214.5 176 61.9
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 8.3e-54 214.2 159 66.7
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 8.3e-54 214.2 176 61.9
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.4e-53 213.4 147 67.3
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.4e-53 213.4 158 65.8
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.8e-53 213.0 158 65.8
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 2.4e-53 212.6 158 65.2
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.4e-53 212.6 148 66.2
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.4e-53 212.6 194 57.2
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 5.4e-53 211.5 147 69.4
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 7.0e-53 211.1 158 63.9
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 7.0e-53 211.1 155 64.5
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.6e-52 209.9 160 63.8
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.6e-52 209.9 147 66.0
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.6e-52 209.9 154 67.5
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.0e-52 209.5 179 58.1
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.7e-52 209.1 165 66.1
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 2.7e-52 209.1 159 62.9
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 2.2e-51 206.1 153 62.1
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.1e-50 203.8 149 66.4
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 5.5e-50 201.4 158 64.6
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 5.5e-50 201.4 160 60.6
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.6e-49 199.9 163 60.1
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 6.1e-49 198.0 158 59.5
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.4e-48 196.8 179 58.7
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 8.3e-46 187.6 146 67.1
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.4e-45 186.0 122 75.4
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 9.1e-45 184.1 176 56.2
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 2.7e-44 182.6 274 40.9
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.5e-44 182.2 252 43.7
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 4.5e-44 181.8 194 52.1
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 8.6e-43 177.6 163 55.8
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 9.5e-42 174.1 111 70.3
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.2e-41 173.7 150 55.3
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 6.1e-41 171.4 102 79.4
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 1.4e-40 170.2 109 74.3
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 3.4e-39 165.6 144 58.3
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.1e-37 160.6 115 71.3
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 2.0e-36 156.4 101 75.2
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 3.5e-36 155.6 89 88.8
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 7.8e-36 154.5 158 45.6
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 1.7e-35 153.3 255 40.4
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 8.6e-35 151.0 158 48.1
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 6.4e-30 134.8 100 68.0
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 8.3e-30 134.4 126 51.6
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.4e-29 133.7 80 78.8
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.4e-29 132.9 148 48.0
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 5.4e-29 131.7 98 67.3
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.2e-20 104.0 77 63.6
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 6.6e-19 98.2 82 61.0
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-17 93.2 89 53.9
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 3.6e-17 92.4 90 52.2
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.2e-17 91.7 89 50.6
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 6.2e-17 91.7 166 37.3
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.4e-16 90.5 164 36.0
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.0e-16 89.0 89 50.6
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.0e-15 86.7 54 81.5
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 9.9e-15 84.3 57 75.4
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.3e-14 84.0 90 52.2
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 3.2e-13 79.3 143 32.9
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 7.1e-13 78.2 70 57.1
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.2e-12 77.4 104 38.5
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.6e-12 75.5 86 53.5
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.9e-11 72.4 52 65.4
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 4.3e-10 68.9 58 56.9
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 5.6e-10 68.6 55 58.2
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 5.6e-10 68.6 55 58.2
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.6e-10 67.8 49 67.3
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 8.4e-06 54.7 31 71.0
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 8.4e-06 54.7 31 74.2


User provided reference genes

Program Settings