Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 6.3e-227 790.4 393 100.0
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.2e-206 723.0 393 91.6
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 2.0e-188 662.5 394 83.5
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 7.1e-162 574.3 389 71.2
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 3.5e-161 572.0 393 71.8
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.2e-158 563.5 395 70.4
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.2e-156 557.0 393 69.2
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 5.8e-156 554.7 391 68.5
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.8e-155 552.0 396 68.7
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 4.9e-155 551.6 424 65.1
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 6.4e-155 551.2 392 68.6
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 8.4e-155 550.8 393 67.9
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 8.4e-155 550.8 393 69.0
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.1e-154 550.4 393 66.9
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 2.4e-154 549.3 392 67.9
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-154 548.9 393 67.7
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.1e-154 548.5 393 67.7
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 5.4e-154 548.1 394 68.3
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 7.1e-154 547.7 391 68.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.2e-153 547.0 395 69.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.6e-153 546.6 391 68.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 3.5e-153 545.4 393 67.4
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 3.9e-152 542.0 394 66.2
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 8.6e-152 540.8 450 62.2
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 3.3e-151 538.9 393 67.9
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 5.6e-151 538.1 391 67.5
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 5.6e-151 538.1 396 65.7
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.6e-150 536.6 391 66.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.6e-150 536.6 386 67.6
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.1e-150 536.2 391 66.5
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 5.2e-149 531.6 404 64.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.2e-149 531.6 392 66.1
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 6.9e-149 531.2 393 66.2
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.5e-148 530.0 391 67.3
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 4.4e-148 528.5 391 66.0
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 5.8e-148 528.1 393 65.4
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 7.6e-148 527.7 417 65.2
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.1e-146 523.9 416 64.9
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.4e-146 523.5 395 67.1
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 3.2e-146 522.3 391 66.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.6e-145 520.0 379 67.5
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 6.0e-145 518.1 392 64.8
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 7.8e-145 517.7 392 64.5
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 1.0e-144 517.3 392 64.3
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.3e-144 516.9 391 63.2
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 6.6e-144 514.6 388 63.9
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 6.6e-144 514.6 393 65.6
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 8.7e-144 514.2 469 59.1
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.5e-143 513.5 390 63.8
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 1.9e-143 513.1 390 63.8
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 5.6e-143 511.5 392 64.5
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.8e-142 509.2 391 63.9
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 3.6e-142 508.8 386 63.5
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.6e-142 508.8 390 64.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.4e-141 506.1 428 60.0
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.4e-141 506.1 428 60.5
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 3.1e-141 505.8 393 63.9
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 4.0e-141 505.4 391 64.2
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 6.9e-141 504.6 392 62.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 9.0e-141 504.2 390 62.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.2e-140 503.8 393 63.4
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 2.6e-140 502.7 391 62.9
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 4.5e-140 501.9 391 63.4
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 5.8e-140 501.5 367 68.1
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 7.6e-140 501.1 393 62.8
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 7.6e-140 501.1 380 64.5
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 3.8e-139 498.8 406 61.1
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 8.4e-139 497.7 393 62.8
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 4.2e-138 495.4 391 62.9
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 9.3e-138 494.2 393 62.6
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 9.3e-138 494.2 385 62.1
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.6e-137 493.4 394 61.7
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 4.6e-137 491.9 393 63.1
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 4.6e-137 491.9 359 67.1
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 5.1e-136 488.4 393 62.1
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 2.8e-134 482.6 394 61.7
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.4e-133 479.6 391 60.6
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 6.4e-131 471.5 391 60.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.9e-127 459.9 381 61.7
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 2.5e-127 459.5 358 64.2
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 3.3e-127 459.1 394 58.9
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 4.0e-125 452.2 503 48.7
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 2.1e-121 439.9 331 64.0
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 7.9e-121 438.0 442 52.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.8e-117 426.8 432 53.2
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 2.7e-113 412.9 390 53.6
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 1.6e-110 403.7 351 56.7
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.8e-110 402.1 388 52.8
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.4e-109 400.6 313 63.6
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.3e-103 379.4 283 65.0
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.5e-100 370.5 297 63.3
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 7.7e-100 368.2 272 65.1
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.3e-99 367.5 397 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.5e-98 363.2 399 47.1
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.2e-98 362.5 356 52.0
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.7e-97 359.8 401 47.1
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 3.3e-87 326.2 393 45.0
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.8e-86 323.2 250 65.2
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 9.4e-82 308.1 314 50.6
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.7e-81 306.6 233 65.2
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.7e-78 297.4 217 64.5
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.7e-76 290.0 229 62.9
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.8e-72 277.3 481 36.0
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.2e-70 270.4 370 39.5
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 2.0e-68 263.8 199 65.8
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 3.5e-60 236.5 321 39.6
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 3.6e-49 199.9 143 67.1
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 4.3e-42 176.4 130 69.2
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 7.3e-42 175.6 532 25.9
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.8e-33 147.1 111 65.8
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.0e-31 141.0 121 62.8
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.4e-31 139.8 121 62.0
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.4e-31 139.8 121 62.0
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.4e-31 139.8 121 62.0
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.2e-30 137.5 121 61.2
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.9e-30 137.1 121 61.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.4e-29 134.0 111 60.4
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 2.4e-29 134.0 80 77.5
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-28 131.7 111 60.4
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-28 131.7 104 56.7
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.0e-27 128.6 111 57.7
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.3e-27 128.3 79 75.9
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.0e-24 115.5 82 70.7
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 3.4e-23 113.6 171 40.4
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-22 111.3 74 71.6
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.1e-21 108.6 111 53.2
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 1.4e-21 108.2 307 27.4
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 4.2e-21 106.7 182 33.0
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-19 101.7 267 31.1
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.9e-19 100.1 60 78.3
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.9e-19 100.1 69 65.2
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.7e-17 93.6 66 68.2
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.7e-17 93.6 66 68.2
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-16 92.0 66 66.7
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 4.0e-16 90.1 124 41.1
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 9.9e-15 85.5 47 93.6
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.9e-15 85.5 66 65.2
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-14 85.1 71 52.1
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.2e-14 84.3 64 65.6
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-12 78.6 53 71.7
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.5e-12 77.0 111 41.4
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 5.1e-11 73.2 51 68.6
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 4.8e-09 66.6 72 44.4
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-07 60.8 58 43.1


User provided reference genes

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