Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 8.5e-115 417.2 231 100.0
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.6e-113 412.9 231 95.7
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 4.7e-113 411.4 231 98.3
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 3.9e-112 408.3 231 97.0
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 9.7e-111 403.7 231 94.8
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.8e-104 382.9 231 88.7
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 5.2e-104 381.3 231 88.7
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.5e-103 379.8 231 86.6
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 9.7e-103 377.1 231 84.8
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 9.7e-103 377.1 228 86.0
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 1.3e-102 376.7 231 88.7
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 4.8e-102 374.8 228 86.8
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 4.8e-102 374.8 230 87.8
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 6.3e-102 374.4 229 85.6
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 8.2e-102 374.0 231 85.7
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 8.2e-102 374.0 234 84.6
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.8e-101 372.9 231 85.3
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.8e-101 372.9 229 87.3
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.8e-101 372.9 231 87.4
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 2.4e-101 372.5 231 86.1
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.4e-101 372.5 231 85.3
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 2.4e-101 372.5 231 84.8
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 2.4e-101 372.5 232 86.2
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 3.1e-101 372.1 232 87.1
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.1e-101 371.7 231 84.8
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 4.1e-101 371.7 228 88.6
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 4.1e-101 371.7 231 84.8
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 4.1e-101 371.7 229 89.5
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 4.1e-101 371.7 229 85.6
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.1e-101 371.7 229 85.6
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 9.1e-101 370.5 231 87.0
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.2e-100 370.2 231 85.3
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 1.2e-100 370.2 231 85.3
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.2e-100 370.2 231 84.8
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.6e-100 369.8 231 85.3
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.6e-100 369.8 231 85.3
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.6e-100 369.8 231 84.0
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 1.6e-100 369.8 232 84.1
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 2.0e-100 369.4 235 85.5
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 2.6e-100 369.0 231 85.3
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.6e-100 369.0 229 84.3
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 2.6e-100 369.0 232 87.5
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 7.7e-100 367.5 231 84.8
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 7.7e-100 367.5 229 84.7
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.0e-99 367.1 231 84.4
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.0e-99 367.1 231 84.4
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.7e-99 366.3 228 85.5
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 2.2e-99 365.9 228 84.6
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.9e-99 365.5 228 85.5
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 2.9e-99 365.5 231 84.4
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.9e-99 365.5 231 83.5
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 3.8e-99 365.2 227 83.7
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 3.8e-99 365.2 229 83.8
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 3.8e-99 365.2 231 85.3
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 5.0e-99 364.8 231 84.0
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 5.0e-99 364.8 231 83.5
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 6.5e-99 364.4 231 84.0
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 8.5e-99 364.0 231 84.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 8.5e-99 364.0 229 83.8
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 1.1e-98 363.6 229 84.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.1e-98 363.6 231 83.5
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.1e-98 363.6 227 85.0
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 2.5e-98 362.5 229 83.4
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 3.2e-98 362.1 231 82.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.2e-98 361.7 207 90.3
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 4.2e-98 361.7 228 82.0
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 5.5e-98 361.3 231 83.5
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 7.2e-98 360.9 226 85.0
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 9.4e-98 360.5 228 83.8
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 9.4e-98 360.5 231 82.3
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 9.4e-98 360.5 227 82.8
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-97 360.1 231 82.7
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.2e-97 360.1 231 82.7
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.2e-97 360.1 231 83.1
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.6e-97 359.8 231 81.8
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 1.6e-97 359.8 224 83.9
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 2.1e-97 359.4 228 81.6
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 2.1e-97 359.4 229 85.6
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 2.1e-97 359.4 229 83.0
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.1e-97 359.4 229 83.0
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.7e-97 359.0 231 83.5
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.7e-97 359.0 231 83.1
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.6e-97 358.6 231 83.1
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 3.6e-97 358.6 207 90.3
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 3.6e-97 358.6 207 89.4
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 4.7e-97 358.2 235 82.6
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 6.1e-97 357.8 231 83.1
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 6.1e-97 357.8 231 81.8
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.1e-97 357.8 231 82.7
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 8.0e-97 357.5 231 83.1
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 8.0e-97 357.5 231 83.1
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 8.0e-97 357.5 231 83.1
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 8.0e-97 357.5 258 76.0
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 8.0e-97 357.5 231 81.8
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.4e-96 356.7 231 81.4
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.4e-96 356.7 231 81.4
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.4e-96 356.7 231 80.1
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.8e-96 356.3 231 82.7
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.0e-96 355.5 231 81.0
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.0e-96 355.5 207 87.0
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 4.0e-96 355.1 235 80.9
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 5.2e-96 354.8 230 84.3
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 6.7e-96 354.4 217 84.8
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 1.2e-95 353.6 231 81.0
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.3e-95 352.1 228 79.4
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 5.7e-95 351.3 204 88.2
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 2.2e-94 349.4 229 80.3
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 6.3e-94 347.8 228 79.8
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 4.5e-92 341.7 228 77.2
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.1e-90 337.0 203 84.2
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.9e-90 336.3 231 78.8
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.6e-89 333.2 233 77.7
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 5.7e-87 324.7 300 62.7
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 7.5e-87 324.3 192 87.5
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 2.5e-82 309.3 216 73.1
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 7.2e-82 307.8 204 78.4
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 2.2e-78 296.2 207 73.9
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 7.8e-76 287.7 194 84.0
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.9e-75 285.8 194 80.9
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 5.6e-74 281.6 181 85.6
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 2.1e-73 279.6 221 68.8
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.0e-71 273.1 161 88.2
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 5.8e-71 271.6 158 90.5
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 7.5e-71 271.2 158 89.9
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 2.9e-70 269.2 158 88.0
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 5.4e-69 265.0 180 77.2
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-68 263.5 186 73.7
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.0e-68 263.1 154 88.3
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 2.7e-68 262.7 166 83.7
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.0e-67 260.8 183 75.4
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.2e-65 253.8 161 83.9
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 1.6e-60 236.9 160 76.9
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.6e-52 208.8 127 85.8
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 2.1e-49 199.9 161 70.2
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.2e-41 174.1 110 85.5
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 3.1e-40 169.5 104 89.4
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.6e-39 166.4 103 83.5
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-32 144.4 158 54.4
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.4e-31 139.4 88 85.2
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.9e-29 133.7 79 81.0
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 6.9e-24 115.2 206 37.9
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 4.9e-22 109.0 57 89.5
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 2.5e-21 106.7 81 72.8
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 1.9e-18 97.1 66 75.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 5.8e-15 85.5 66 66.7
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 7.6e-15 85.1 65 63.1
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 2.5e-10 70.1 46 73.9


User provided reference genes

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